Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   vpachn25_RS10375 Genome accession   NZ_CP010883
Coordinates   2280239..2281642 (-) Length   467 a.a.
NCBI ID   WP_005461534.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain CHN25     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2275239..2286642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vpachn25_RS10340 (VpaChn25_1978) moaE 2275811..2276266 (-) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -
  vpachn25_RS10345 (VpaChn25_1979) moaD 2276268..2276525 (-) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  vpachn25_RS10350 (VpaChn25_1980) moaC 2276522..2277001 (-) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  vpachn25_RS10355 (VpaChn25_1981) moaB 2277028..2277540 (-) 513 WP_005461494.1 molybdenum cofactor biosynthesis protein B -
  vpachn25_RS10360 (VpaChn25_1982) moaA 2277643..2278632 (-) 990 WP_065870823.1 GTP 3',8-cyclase MoaA -
  vpachn25_RS10365 (VpaChn25_1983) - 2278928..2279821 (+) 894 WP_017447831.1 YvcK family protein -
  vpachn25_RS10370 (VpaChn25_1984) luxU 2279898..2280236 (-) 339 WP_020838698.1 quorum-sensing phosphorelay protein LuxU -
  vpachn25_RS10375 (VpaChn25_1985) luxO 2280239..2281642 (-) 1404 WP_005461534.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  vpachn25_RS10380 (VpaChn25_1986) uvrB 2281932..2283962 (-) 2031 WP_005494496.1 excinuclease ABC subunit UvrB -
  vpachn25_RS10390 (VpaChn25_1988) rsxA 2284953..2285531 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  vpachn25_RS10395 (VpaChn25_1989) rsxB 2285535..2286053 (+) 519 Protein_2048 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52173.71 Da        Isoelectric Point: 6.2547

>NTDB_id=140566 vpachn25_RS10375 WP_005461534.1 2280239..2281642(-) (luxO) [Vibrio parahaemolyticus strain CHN25]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=140566 vpachn25_RS10375 WP_005461534.1 2280239..2281642(-) (luxO) [Vibrio parahaemolyticus strain CHN25]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTCGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCACGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCACGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGCAAAGCAACTAAGCTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCCGCCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCTGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAGATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAGAAAGTGGGTTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGACCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTATTGCGTAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGCTAGATATGTTGCCACCGCCGCTGAATCAACCATTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACCGTTTCAGAGATCATGCCACTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGCAATATTCCTAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.5

95.931

0.839
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368

Multiple sequence alignment