Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RDF_RS03980 Genome accession   NZ_CP010867
Coordinates   750178..750987 (+) Length   269 a.a.
NCBI ID   WP_001289499.1    Uniprot ID   A0AAD2WV74
Organism   Streptococcus agalactiae strain SS1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 745178..755987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDF_RS03955 (RDF_0728) - 745507..746202 (-) 696 WP_000173640.1 amino acid ABC transporter permease -
  RDF_RS03960 (RDF_0729) - 746215..747015 (-) 801 WP_000946171.1 transporter substrate-binding domain-containing protein -
  RDF_RS03965 (RDF_0730) - 747027..747782 (-) 756 WP_000053154.1 amino acid ABC transporter ATP-binding protein -
  RDF_RS03970 (RDF_0731) vicR 748122..748832 (+) 711 WP_000722052.1 response regulator YycF Regulator
  RDF_RS03975 (RDF_0732) vicK 748825..750174 (+) 1350 WP_001065469.1 cell wall metabolism sensor histidine kinase VicK Regulator
  RDF_RS03980 (RDF_0733) vicX 750178..750987 (+) 810 WP_001289499.1 MBL fold metallo-hydrolase Regulator
  RDF_RS03985 (RDF_0734) - 750990..751358 (+) 369 WP_000719384.1 YbaN family protein -
  RDF_RS03990 (RDF_0735) rnc 751534..752220 (+) 687 WP_000661526.1 ribonuclease III -
  RDF_RS03995 (RDF_0736) smc 752228..755767 (+) 3540 WP_000478794.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30246.18 Da        Isoelectric Point: 6.0756

>NTDB_id=140392 RDF_RS03980 WP_001289499.1 750178..750987(+) (vicX) [Streptococcus agalactiae strain SS1]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGTTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAS
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=140392 RDF_RS03980 WP_001289499.1 750178..750987(+) (vicX) [Streptococcus agalactiae strain SS1]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATCGATGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAGCCAGAAGATT
TAGATGCTATACTAGTTACCCACGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCTAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTACAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAAGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCCCCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.208

100

0.762

Multiple sequence alignment