Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RDF_RS02235 Genome accession   NZ_CP010867
Coordinates   391491..392216 (+) Length   241 a.a.
NCBI ID   WP_000912307.1    Uniprot ID   A0AAV3JGZ9
Organism   Streptococcus agalactiae strain SS1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 386491..397216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDF_RS02200 (RDF_0369) tsaE 387294..387737 (+) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  RDF_RS02205 (RDF_0370) - 387730..388251 (+) 522 WP_000043146.1 GNAT family N-acetyltransferase -
  RDF_RS02210 (RDF_0371) brpA 388260..389567 (+) 1308 WP_000708156.1 biofilm formation/cell division transcriptional regulator BrpA -
  RDF_RS02215 (RDF_0372) - 389631..389927 (-) 297 WP_000690175.1 hypothetical protein -
  RDF_RS02220 (RDF_0373) - 389924..390343 (-) 420 WP_000368097.1 HIT family protein -
  RDF_RS02225 (RDF_0374) - 390679..391182 (+) 504 WP_000773453.1 hypothetical protein -
  RDF_RS02230 (RDF_0375) - 391234..391419 (-) 186 WP_000368100.1 hypothetical protein -
  RDF_RS02235 (RDF_0376) pptA 391491..392216 (+) 726 WP_000912307.1 ABC transporter ATP-binding protein Regulator
  RDF_RS02240 (RDF_0377) pptB 392218..393252 (+) 1035 WP_000732713.1 ABC transporter permease Regulator
  RDF_RS02245 (RDF_0378) ccrZ 393310..394110 (+) 801 WP_000155919.1 cell cycle regulator CcrZ -
  RDF_RS02250 (RDF_0379) trmB 394100..394735 (+) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  RDF_RS02260 (RDF_0380) rimP 395225..395701 (+) 477 WP_041971671.1 ribosome maturation factor RimP -
  RDF_RS02265 (RDF_0381) nusA 395737..396888 (+) 1152 WP_000032295.1 transcription termination factor NusA -
  RDF_RS02270 (RDF_0382) rnpM 396910..397206 (+) 297 WP_001140526.1 RNase P modulator RnpM -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26835.26 Da        Isoelectric Point: 4.5704

>NTDB_id=140384 RDF_RS02235 WP_000912307.1 391491..392216(+) (pptA) [Streptococcus agalactiae strain SS1]
MLKIENVTGGYVNIPVLKNISFEVNDGELVGLIGLNGAGKSTTINEIIGILRPYQGDITIDGISLEADQELYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDIATDEVMARAQKLLEMFRLTDKLDWFPMHFSKGMKQKVMIICAFVVSPSLFIVDEPF
LGLDPLAISDLINLLAEEKAKGKSILMSTHVLDSAEKMCDRFVILHKGEIRAVGTLEELRAIFGDSNANLNDIYIALTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=140384 RDF_RS02235 WP_000912307.1 391491..392216(+) (pptA) [Streptococcus agalactiae strain SS1]
ATGTTAAAAATTGAAAATGTTACAGGGGGGTATGTTAATATCCCAGTTTTAAAAAATATTTCTTTTGAAGTAAATGATGG
AGAGTTAGTTGGATTAATTGGGCTTAATGGTGCAGGAAAATCAACCACTATTAACGAGATTATTGGTATTTTGAGACCCT
ATCAAGGAGATATTACAATTGATGGTATTAGTCTTGAAGCCGACCAAGAACTTTATAGAAAGAAAATAGGCTTTATTCCT
GAGACACCAAGTCTCTATGAGGAGCTAACTCTCAGGGAACATTTAGAAACGGTAGCTATGGCGTATGATATTGCCACCGA
TGAAGTTATGGCACGTGCGCAAAAACTATTAGAGATGTTTCGTCTAACAGATAAATTAGACTGGTTTCCAATGCATTTTT
CAAAGGGAATGAAACAAAAGGTTATGATTATTTGTGCTTTTGTTGTATCTCCAAGTTTATTTATTGTTGATGAACCATTT
TTAGGTTTGGATCCACTAGCTATTTCAGATTTGATTAATCTTCTAGCAGAAGAAAAAGCTAAAGGGAAATCTATTTTGAT
GTCAACACACGTATTAGATTCTGCCGAAAAAATGTGTGATCGTTTTGTTATTTTACATAAAGGAGAAATACGGGCAGTTG
GAACCCTAGAGGAATTACGGGCTATTTTTGGAGACAGTAATGCTAATTTAAATGACATCTACATAGCTCTGACAAAAGAG
GTGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

77.824

99.17

0.772
  pptA Streptococcus salivarius strain HSISS4

77.406

99.17

0.768

Multiple sequence alignment