Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   VAB027_RS16445 Genome accession   NZ_CP010812
Coordinates   3565170..3565757 (+) Length   195 a.a.
NCBI ID   WP_046127120.1    Uniprot ID   -
Organism   Vibrio cholerae strain 10432-62     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3560170..3570757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS16425 (VAB027_3257) - 3560506..3561423 (-) 918 WP_000271068.1 ABC transporter ATP-binding protein -
  VAB027_RS16430 (VAB027_3258) - 3561804..3563450 (-) 1647 WP_000484915.1 SulP family inorganic anion transporter -
  VAB027_RS16435 (VAB027_3259) can 3563598..3564266 (+) 669 WP_001114117.1 carbonate dehydratase -
  VAB027_RS16440 (VAB027_3260) hpt 3564341..3564874 (-) 534 WP_046127119.1 hypoxanthine phosphoribosyltransferase -
  VAB027_RS16445 (VAB027_3261) hapR 3565170..3565757 (+) 588 WP_046127120.1 quorum-sensing master transcriptional regulator HapR Regulator
  VAB027_RS16450 (VAB027_3262) rsmI 3565967..3566833 (-) 867 WP_000131547.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  VAB027_RS16455 (VAB027_3263) - 3566903..3568708 (+) 1806 WP_001015487.1 penicillin-binding protein activator -
  VAB027_RS16460 (VAB027_3264) - 3568695..3569063 (+) 369 WP_001893625.1 YraN family protein -
  VAB027_RS16465 (VAB027_3265) - 3569067..3569657 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  VAB027_RS16470 (VAB027_3266) - 3569660..3570229 (+) 570 WP_046127121.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22732.29 Da        Isoelectric Point: 6.9512

>NTDB_id=140004 VAB027_RS16445 WP_046127120.1 3565170..3565757(+) (hapR) [Vibrio cholerae strain 10432-62]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSASTRDANRTNQLLIRNMFMKAMERGELCEKHDVDNMASLFH
GIFYSIFLQVNRLGEQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 588 bp        

>NTDB_id=140004 VAB027_RS16445 WP_046127120.1 3565170..3565757(+) (hapR) [Vibrio cholerae strain 10432-62]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTATCGCCTCAAAAACGCAAACTACAACTGATGGAAATCGCGTT
GGAAGTGTTTGCTAAACGCGGCATTGGTCGTGGTGGTCACGCAGATATTGCCGAGATTGCGCAAGTCTCCGTTGCAACAG
TGTTCAACTACTTCCCAACTCGTGAAGACTTGGTTGACGATGTGCTGAATTTTGTGGTTCGTCAGTACTCCAACTTCTTG
ACCGATCACATCGATCTTGATTTGGATGTGAAAACCAACCTACAAACTCTGTGCAAAGAGATGGTGAAATTGGCGATGAC
CGATTGTCACTGGCTCAAAGTCTGGTTTGAGTGGAGTGCTTCAACCCGTGACGCCAACCGAACTAACCAACTGCTGATCA
GAAACATGTTTATGAAAGCGATGGAACGTGGCGAATTGTGTGAGAAACACGATGTCGATAACATGGCCAGCCTGTTCCAC
GGCATCTTCTACTCCATCTTCTTACAAGTGAACCGTTTAGGTGAACAAGAAGCAGTGTATAAGTTGGTCGATAGCTACCT
CAATATGCTGTGTATCTATAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

95.074

100

0.99
  hapR Vibrio cholerae strain A1552

95.074

100

0.99
  opaR Vibrio parahaemolyticus RIMD 2210633

68.182

100

0.692

Multiple sequence alignment