Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VAB027_RS08690 Genome accession   NZ_CP010812
Coordinates   1822274..1823641 (+) Length   455 a.a.
NCBI ID   WP_002040600.1    Uniprot ID   -
Organism   Vibrio cholerae strain 10432-62     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1817274..1828641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS08665 (VAB027_1700) rsxB 1817763..1818350 (-) 588 WP_000104488.1 electron transport complex subunit RsxB -
  VAB027_RS08670 (VAB027_1701) rsxA 1818350..1818931 (-) 582 WP_000141550.1 electron transport complex subunit RsxA -
  VAB027_RS08680 (VAB027_1703) uvrB 1819813..1821843 (+) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  VAB027_RS08690 (VAB027_1704) luxO 1822274..1823641 (+) 1368 WP_002040600.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VAB027_RS08695 (VAB027_1706) luxU 1823645..1823986 (+) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  VAB027_RS08700 (VAB027_1705) - 1823975..1824865 (-) 891 WP_000061070.1 YvcK family protein -
  VAB027_RS08705 (VAB027_1707) moaA 1825172..1826161 (+) 990 WP_046126566.1 GTP 3',8-cyclase MoaA -
  VAB027_RS08710 (VAB027_1708) moaB 1826221..1826733 (+) 513 WP_046126567.1 molybdenum cofactor biosynthesis protein B -
  VAB027_RS08715 (VAB027_1709) moaC 1826744..1827223 (+) 480 WP_000080906.1 cyclic pyranopterin monophosphate synthase MoaC -
  VAB027_RS08720 (VAB027_1710) moaD 1827220..1827465 (+) 246 WP_000598587.1 molybdopterin synthase sulfur carrier subunit -
  VAB027_RS08725 (VAB027_1711) moaE 1827467..1827928 (+) 462 WP_000350082.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50867.18 Da        Isoelectric Point: 5.5755

>NTDB_id=139989 VAB027_RS08690 WP_002040600.1 1822274..1823641(+) (luxO) [Vibrio cholerae strain 10432-62]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKVSKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=139989 VAB027_RS08690 WP_002040600.1 1822274..1823641(+) (luxO) [Vibrio cholerae strain 10432-62]
ATGGTAGAAGACACGGCATCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCGCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGAGTCAC
TGTGAATAATGCGATTCGCAAAGTCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACCGGTAAAGAAGTGTGCGCGGAGGCGATTCATGCCGCGAGCAAGCGCGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTTAAAGGGGCTTTTACCGGAGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTGCTGCGCTTCATCCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCGACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGGCGTTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGCGGTGATGATGTGATCGAGATTGCTTACTCACTGCTTGGCTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGTCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTCTGCGCAACGTGGTCGTGCTCAATGAAGGTCGTGAAATCACCTTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTATGGATGACCGAAAAACAAGCCATTGAACAAGCCATAGAAGCGTGTGATGGTAACATTCCCCGCGCCGC
GACCTATCTGGATGTCAGTCCATCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment