Detailed information
Bioinformatically predicted
Overview
| Name | comL | Type | Machinery gene |
| Locus tag | ASZ80_RS03780 | Genome accession | NZ_CP013301 |
| Coordinates | 766903..767628 (-) | Length | 241 a.a. |
| NCBI ID | WP_000877198.1 | Uniprot ID | Q9KU21 |
| Organism | Vibrio cholerae strain C5 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 761903..772628
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ASZ80_RS03765 (ASZ80_00747) | - | 763538..764578 (-) | 1041 | WP_000595738.1 | polyamine ABC transporter substrate-binding protein | - |
| ASZ80_RS03770 (ASZ80_00748) | pheA | 764760..765935 (-) | 1176 | WP_000130282.1 | prephenate dehydratase | - |
| ASZ80_RS03775 (ASZ80_00749) | hpf | 766175..766501 (-) | 327 | WP_000700176.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| ASZ80_RS03780 (ASZ80_00751) | comL | 766903..767628 (-) | 726 | WP_000877198.1 | outer membrane protein assembly factor BamD | Machinery gene |
| ASZ80_RS03785 (ASZ80_00752) | rluD | 767783..768757 (+) | 975 | WP_000941107.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| ASZ80_RS03790 (ASZ80_00753) | pgeF | 768760..769482 (+) | 723 | WP_000602844.1 | peptidoglycan editing factor PgeF | - |
| ASZ80_RS03795 (ASZ80_00754) | clpC | 769607..772180 (+) | 2574 | WP_001235051.1 | ATP-dependent chaperone ClpB | Regulator |
Sequence
Protein
Download Length: 241 a.a. Molecular weight: 27875.68 Da Isoelectric Point: 5.1660
>NTDB_id=139960 ASZ80_RS03780 WP_000877198.1 766903..767628(-) (comL) [Vibrio cholerae strain C5]
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L
MKYQTLSGLLALSLLFGCSSSPDVVPDVPPSQLYSEAQTALQSGTWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATIERFTRLNPTHEKMDWVLYMRGLTHMAQDRNFMHDLFNIDRRDRDPEPVKAAFADFKKLLQRYPNSPYAED
AQRRMFALKNRLAEYDLATADFYLRREAWIAAINRTQELQKTYPDTEAARKSLEIQLEAYQQLGLTDAIERTKQLMQLNP
L
Nucleotide
Download Length: 726 bp
>NTDB_id=139960 ASZ80_RS03780 WP_000877198.1 766903..767628(-) (comL) [Vibrio cholerae strain C5]
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATACAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA
ATGAAATACCAGACTTTATCAGGCCTACTCGCGTTATCCCTGTTATTTGGTTGCTCTAGCAGCCCAGATGTGGTGCCAGA
TGTACCGCCATCACAGCTGTACTCTGAAGCGCAAACCGCTCTACAAAGCGGAACGTGGTTAACCGCTATCGAAAAACTAG
AGGCGCTCGATTCACGCTATCCATTTGGTGCTTATTCAGAGCAAGTACAGCTCGATCTGATTTATGCCTACTACAAAAAT
GATGATCTGGCCCTTGGCCTCGCGACCATCGAACGTTTTACACGCCTTAATCCAACCCATGAAAAAATGGATTGGGTACT
CTACATGCGCGGTTTGACGCACATGGCGCAAGATCGCAACTTCATGCATGACCTGTTTAATATCGATCGCCGTGACCGCG
ATCCTGAACCCGTGAAAGCAGCCTTTGCGGATTTTAAGAAACTGCTCCAGCGTTACCCAAACAGCCCATACGCAGAAGAT
GCGCAGCGTCGAATGTTTGCGCTCAAGAACCGTTTAGCGGAATACGATTTAGCGACCGCAGATTTCTACCTGCGCCGTGA
AGCATGGATTGCAGCGATTAATCGCACTCAAGAGTTACAAAAAACCTATCCAGATACCGAAGCGGCACGTAAATCCTTAG
AAATACAACTCGAGGCTTATCAGCAGCTTGGTTTAACCGACGCGATAGAGCGAACTAAGCAGTTAATGCAGCTTAACCCT
TTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comL | Neisseria meningitidis MC58 |
38.589 |
100 |
0.386 |
| comL | Neisseria gonorrhoeae MS11 |
37.759 |
100 |
0.378 |