Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   VAA049_RS11270 Genome accession   NZ_CP010811
Coordinates   2474567..2475463 (+) Length   298 a.a.
NCBI ID   WP_080342503.1    Uniprot ID   -
Organism   Vibrio cholerae strain 1154-74     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2469567..2480463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAA049_RS11250 (VAA049_2214) glpC 2469724..2470965 (-) 1242 WP_001014986.1 anaerobic glycerol-3-phosphate dehydrogenase subunit GlpC -
  VAA049_RS11255 (VAA049_2215) glpB 2470962..2472272 (-) 1311 WP_000972325.1 glycerol-3-phosphate dehydrogenase subunit GlpB -
  VAA049_RS11260 (VAA049_2216) glpA 2472269..2473912 (-) 1644 WP_000128116.1 anaerobic glycerol-3-phosphate dehydrogenase subunit A -
  VAA049_RS11270 (VAA049_2217) luxP 2474567..2475463 (+) 897 WP_080342503.1 aquaporin Regulator
  VAA049_RS11275 (VAA049_2219) luxQ 2475481..2478054 (+) 2574 WP_046121925.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  VAA049_RS11280 (VAA049_2218) - 2478046..2478711 (-) 666 WP_000268198.1 flagellar brake protein -
  VAA049_RS11285 (VAA049_2220) - 2478914..2479432 (-) 519 WP_000914961.1 hypothetical protein -
  VAA049_RS11295 (VAA049_2221) - 2479670..2480068 (-) 399 WP_000831416.1 YgiW/YdeI family stress tolerance OB fold protein -

Sequence

Protein


Download         Length: 298 a.a.        Molecular weight: 32402.88 Da        Isoelectric Point: 5.1134

>NTDB_id=139946 VAA049_RS11270 WP_080342503.1 2474567..2475463(+) (luxP) [Vibrio cholerae strain 1154-74]
MNQTKQHTLLGQCIAEFIGTGLLIFFGVGCVAALVLAGAQFGQWEISIVWGFGVSIAIYCTAGVSGAHINPAVTIALAAF
HGFSSETKLILQNITTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQAHAPKKPYSVLYFSEGYISEARGDTFIQDMNAVH
HFPLASSYYTKATEQSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVT
VMRMNDDTGVAMAEAIKWDLEGKSVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 897 bp        

>NTDB_id=139946 VAA049_RS11270 WP_080342503.1 2474567..2475463(+) (luxP) [Vibrio cholerae strain 1154-74]
ATGAACCAAACAAAGCAACATACTCTGCTCGGGCAGTGTATCGCCGAGTTTATCGGTACAGGATTACTGATTTTCTTCGG
CGTCGGCTGCGTGGCCGCACTCGTTTTAGCAGGTGCTCAATTCGGACAGTGGGAAATCAGCATTGTCTGGGGTTTTGGCG
TATCGATTGCCATTTATTGTACGGCTGGGGTTTCTGGCGCGCACATTAACCCTGCCGTCACTATCGCTCTGGCCGCTTTC
CACGGCTTCTCCTCCGAAACGAAACTGATTTTGCAAAACATCACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCAT
GATGTACATCGGTTTTGATCATGAGTACGGCGCGCAATTATTGGCGCAATATTACCAAGCACATGCCCCGAAAAAGCCGT
ACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGCGGGGAGACACCTTCATTCAAGATATGAACGCGGTGCAC
CATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAACAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAA
TAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGTCGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATC
GACAAGATATTCTGGTCAATGGTTGGGGAGGCGGCTCGGCAGAGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACT
GTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAAGCGATTAAATGGGATTTGGAAGGGAAATCCGTACCTTT
GGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTCAGCAGCACGTATTGCAGAACTGAAAGCTCGGGCTTTCC
GTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Major intrinsic protein (MIP)

(5-86)

Periplasmic binding protein domain (Peripla_BP_4)

(108-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

100

72.148

0.721

Multiple sequence alignment