Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   TK49_RS09715 Genome accession   NZ_CP010799
Coordinates   2036358..2038880 (+) Length   840 a.a.
NCBI ID   WP_045786494.1    Uniprot ID   -
Organism   Ralstonia mannitolilytica strain SN82F48     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2031358..2043880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TK49_RS09695 (TK49_09700) - 2032330..2033397 (-) 1068 WP_045786491.1 hypothetical protein -
  TK49_RS09700 (TK49_09705) - 2033481..2034731 (+) 1251 WP_045786492.1 lipoprotein-releasing ABC transporter permease subunit -
  TK49_RS09705 (TK49_09710) lolD 2034724..2035452 (+) 729 WP_045786493.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  TK49_RS09710 (TK49_09715) - 2035537..2036349 (+) 813 WP_045787833.1 TatD family hydrolase -
  TK49_RS09715 (TK49_09720) comA 2036358..2038880 (+) 2523 WP_045786494.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  TK49_RS09720 (TK49_09725) - 2038985..2040469 (+) 1485 WP_045786495.1 circularly permuted type 2 ATP-grasp protein -
  TK49_RS09725 (TK49_09730) - 2040516..2041466 (+) 951 WP_045786496.1 alpha-E domain-containing protein -
  TK49_RS09730 (TK49_09735) - 2041524..2042360 (+) 837 WP_045787834.1 transglutaminase family protein -
  TK49_RS09735 (TK49_09740) - 2042458..2043360 (+) 903 WP_045786497.1 peptidase -

Sequence

Protein


Download         Length: 840 a.a.        Molecular weight: 90615.97 Da        Isoelectric Point: 9.5293

>NTDB_id=139884 TK49_RS09715 WP_045786494.1 2036358..2038880(+) (comA) [Ralstonia mannitolilytica strain SN82F48]
MRFVLIGFVAGCMALQMQPALAPLWQPLAVLMLCLLLCARVQRRPVWACVFLTASAVAAGFGWSDWRAQQRLSVVLSPAW
EGKDIIATGIVAELPQIGEDATRFLFQIESSNAADAVPPRVRLSWYGMRSWPAAGEDTAEVDRRAGIPDLQPGQRWKLTL
RLKRPHTLMNPGGFDGEYAMLADNVRATGYVRTGKRTQNVALGEADGGFGMRVERWRAAVRRHILDALPEARYAPVIVAL
VVGDQSGIAREDWELFRRTGISHLVSISGLHITMIAGLFAALWMALWRRSFGLARWLRTPLPLRMPTPRAGAIAAMLAAL
GYCLLAGMGVPAQRTLLMLSTVAVARLTDRSVPASLSLCWAAAVVAVVDPWAVMSAGFWLSFGAVAVIFIAAQIALRHPR
HAEPEGWGARMLRSVAGATRVQLAVTFGLLPATLLLFQQASVVSAAANGLAIPLVSFVTTPLALIGTALPDPLAQPVLAS
SEATFRWLAAWLEWVAQPRWAVWVAPVAPAWALSLAAGGVALMLVPGAHRAWAWRAQGTMLLLPMVLARNPVPAVGEFRL
VAFDIGQGAAVLVETARHQVLFDTGPRYGDNADAAARVITPYLRAHGVEALDTLVVSHADSDHAGGTETVINAVPVRTML
ASLPQTHRLRDVARAHGAAFADCVAGQAWAWDGVDFEILHPLRVPADDARVSSNGRSCVLRIGNGRHAALLAGDIEAEQE
AALVKAEAPERLMADILLVPHHGSKTSSSGAFLDAVSAQVAIFQVGYRNRYGHPHPRVWQRYETRGIEGLRTDRTGAVVI
QTDGDGLDIRTARSMRPRYWSSAHEVQTLATATDANDALP

Nucleotide


Download         Length: 2523 bp        

>NTDB_id=139884 TK49_RS09715 WP_045786494.1 2036358..2038880(+) (comA) [Ralstonia mannitolilytica strain SN82F48]
ATGCGCTTCGTGTTGATCGGGTTCGTGGCCGGCTGCATGGCATTGCAGATGCAGCCGGCGCTCGCGCCGTTGTGGCAACC
GCTCGCGGTGCTGATGCTGTGCTTGCTGCTCTGTGCGCGCGTGCAGCGGCGGCCGGTGTGGGCGTGCGTGTTCTTGACGG
CCAGCGCCGTCGCGGCCGGTTTCGGCTGGAGCGACTGGCGGGCACAGCAGCGACTCTCAGTGGTGTTGAGCCCCGCGTGG
GAAGGCAAGGACATCATCGCCACGGGGATCGTGGCCGAGTTGCCGCAGATCGGCGAGGACGCCACGCGGTTCCTGTTCCA
GATCGAATCCAGTAATGCAGCGGACGCCGTGCCGCCGCGCGTGCGCCTGTCGTGGTACGGCATGCGCAGCTGGCCTGCCG
CCGGCGAGGACACCGCCGAGGTCGACCGGCGCGCCGGTATTCCAGACCTGCAACCCGGCCAGCGCTGGAAGTTGACCCTG
CGTCTCAAGCGCCCGCACACGCTGATGAACCCGGGAGGCTTCGACGGTGAATACGCAATGCTGGCCGACAACGTGCGCGC
CACCGGCTACGTGCGCACCGGCAAGCGCACGCAGAACGTTGCGCTGGGCGAGGCGGATGGCGGCTTCGGAATGCGCGTCG
AGCGCTGGCGGGCCGCAGTGCGGCGCCACATCCTCGACGCGTTGCCGGAGGCGCGCTACGCACCGGTGATCGTCGCGCTG
GTGGTGGGCGATCAGAGCGGCATCGCCCGCGAAGACTGGGAGCTGTTCCGCCGCACCGGCATCAGTCATCTGGTCAGTAT
TTCGGGCCTGCACATCACCATGATTGCCGGGCTCTTTGCTGCGCTCTGGATGGCGCTGTGGCGCCGCTCGTTCGGGCTCG
CTCGCTGGCTGCGCACGCCGCTGCCGTTGCGCATGCCGACCCCGCGTGCGGGCGCCATCGCCGCCATGCTCGCGGCCCTC
GGTTACTGCCTGCTTGCCGGCATGGGCGTGCCGGCACAGCGCACGCTGCTGATGCTGTCCACCGTCGCCGTCGCCCGGCT
GACCGATCGCAGCGTGCCGGCGAGCCTGTCGCTATGCTGGGCAGCCGCCGTGGTGGCGGTGGTGGATCCGTGGGCGGTGA
TGTCAGCGGGGTTCTGGCTGTCATTCGGCGCGGTGGCGGTCATCTTCATCGCGGCGCAGATCGCACTGCGCCACCCGCGC
CATGCCGAGCCGGAAGGGTGGGGCGCGCGCATGCTGCGCAGCGTTGCCGGTGCCACGCGTGTCCAGCTTGCCGTCACGTT
CGGGCTGTTGCCGGCGACCTTGCTGCTGTTTCAGCAGGCATCGGTGGTCTCTGCCGCGGCCAACGGCCTCGCGATACCAT
TGGTCAGCTTCGTGACCACGCCGCTGGCGCTGATCGGCACCGCGCTGCCCGATCCGCTTGCCCAGCCCGTGCTGGCCTCG
TCTGAAGCGACCTTCCGGTGGCTGGCGGCGTGGCTCGAATGGGTGGCGCAACCGCGCTGGGCCGTCTGGGTGGCACCGGT
GGCGCCTGCCTGGGCGCTGTCGCTGGCGGCAGGTGGCGTGGCGCTGATGCTCGTGCCAGGCGCGCACCGCGCGTGGGCAT
GGCGGGCACAGGGCACGATGCTGCTCCTGCCGATGGTGCTGGCGCGCAATCCCGTGCCGGCGGTGGGCGAGTTCCGCCTG
GTGGCTTTCGATATCGGCCAGGGTGCCGCCGTGCTGGTTGAGACGGCCCGGCACCAAGTGTTGTTCGACACCGGCCCCCG
GTATGGGGACAACGCCGATGCCGCCGCCCGGGTCATCACGCCGTACCTGCGCGCGCACGGGGTGGAGGCGCTCGACACGC
TCGTCGTCAGCCATGCAGACAGCGACCACGCCGGGGGCACCGAAACGGTGATCAACGCGGTGCCTGTGCGCACCATGTTG
GCGTCTTTGCCGCAAACGCACCGGCTGCGTGACGTGGCGCGGGCCCACGGTGCTGCGTTTGCTGATTGCGTGGCGGGGCA
GGCCTGGGCCTGGGACGGCGTGGACTTCGAAATCCTGCATCCCCTGCGCGTGCCGGCCGACGATGCGCGCGTGTCCAGCA
ACGGCCGCAGCTGTGTTCTGCGCATCGGCAACGGCCGCCACGCAGCGCTGCTGGCGGGCGACATCGAAGCCGAGCAGGAA
GCGGCCCTGGTGAAAGCCGAGGCGCCCGAGCGCCTGATGGCAGACATCTTGCTTGTACCGCATCACGGCAGCAAGACAAG
CTCCAGCGGCGCGTTCTTGGACGCGGTGTCCGCGCAAGTGGCGATTTTCCAGGTCGGCTACCGTAACCGGTATGGGCACC
CGCACCCCCGGGTGTGGCAGCGCTACGAGACGCGCGGCATCGAAGGCTTGCGCACCGACCGGACCGGCGCCGTGGTCATC
CAGACCGACGGTGATGGGCTCGATATCCGGACCGCGCGCTCGATGCGGCCGCGGTACTGGTCTTCCGCACACGAGGTGCA
GACCCTGGCGACGGCCACGGACGCAAATGATGCGCTGCCGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-194)

Competence protein (Competence)

(240-525)

Metallo-beta-lactamase superfamily (Lactamase_B)

(566-755)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

75.207

100

0.758

Multiple sequence alignment