Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FORC22_RS02650 Genome accession   NZ_CP013248
Coordinates   568253..568981 (-) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain FORC_022     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 563253..573981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC22_RS02625 (FORC22_0515) trpR 563640..563951 (+) 312 WP_020904197.1 trp operon repressor -
  FORC22_RS02630 (FORC22_0516) yjjX 564000..564533 (-) 534 WP_021453510.1 inosine/xanthosine triphosphatase -
  FORC22_RS02635 (FORC22_0517) pheA 564558..565736 (-) 1179 WP_005468591.1 prephenate dehydratase -
  FORC22_RS02640 (FORC22_0518) hpf 565980..566306 (-) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FORC22_RS02645 (FORC22_0519) - 566637..568118 (-) 1482 WP_025507089.1 lytic transglycosylase F -
  FORC22_RS02650 (FORC22_0520) comL 568253..568981 (-) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  FORC22_RS02655 (FORC22_0521) rluD 569118..570095 (+) 978 WP_071651815.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FORC22_RS02660 (FORC22_0522) pgeF 570097..570825 (+) 729 WP_029832107.1 peptidoglycan editing factor PgeF -
  FORC22_RS02665 (FORC22_0523) clpC 570973..573546 (+) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=139863 FORC22_RS02650 WP_005460312.1 568253..568981(-) (comL) [Vibrio parahaemolyticus strain FORC_022]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=139863 FORC22_RS02650 WP_005460312.1 568253..568981(-) (comL) [Vibrio parahaemolyticus strain FORC_022]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCTACCCATGAAAAAATGGACTGGGTGCT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTAGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCGTGGATTGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405