Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   FORC22_RS00880 Genome accession   NZ_CP013248
Coordinates   189364..190038 (+) Length   224 a.a.
NCBI ID   WP_005482037.1    Uniprot ID   Q87T86
Organism   Vibrio parahaemolyticus strain FORC_022     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 184364..195038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC22_RS00860 (FORC22_0163) - 184486..185436 (-) 951 WP_017449076.1 Kdo(2)-lipid IV(A) acyltransferase -
  FORC22_RS00865 (FORC22_0164) slmA 185442..186032 (-) 591 WP_005478760.1 nucleoid occlusion factor SlmA -
  FORC22_RS00870 (FORC22_0165) coaBC 186193..187392 (-) 1200 WP_025503778.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  FORC22_RS00875 (FORC22_0166) - 187577..189250 (+) 1674 WP_025499275.1 methyl-accepting chemotaxis protein -
  FORC22_RS00880 (FORC22_0167) radC 189364..190038 (+) 675 WP_005482037.1 RadC family protein Machinery gene
  FORC22_RS00885 (FORC22_0168) rpmB 190342..190578 (+) 237 WP_005467944.1 50S ribosomal protein L28 -
  FORC22_RS00890 (FORC22_0169) rpmG 190592..190762 (+) 171 WP_004410866.1 50S ribosomal protein L33 -
  FORC22_RS00895 (FORC22_0170) - 190850..192382 (+) 1533 WP_005489437.1 phosphoethanolamine transferase -
  FORC22_RS00900 (FORC22_0171) - 192452..192928 (+) 477 WP_071651748.1 hypothetical protein -
  FORC22_RS00905 (FORC22_0172) mutM 193031..193840 (+) 810 WP_025793718.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  FORC22_RS00910 (FORC22_0173) coaD 193937..194419 (+) 483 WP_005462497.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25334.11 Da        Isoelectric Point: 6.6112

>NTDB_id=139858 FORC22_RS00880 WP_005482037.1 189364..190038(+) (radC) [Vibrio parahaemolyticus strain FORC_022]
MILKALPNESMPREKLLQRGPQALTDAELLAIFLRTGTQGMNVIELADFLIQDFGSLRQLFSASEQEFCQHKGLGQAKYV
QLQAVLEMTQRYLAETLKRGDALTSPEQTKLYLSSILRDRQREAFYILFLDNQHRVIKDEILFEGTLDAASVYPREVVKR
ALHHNAAALILAHNHPSGVAEPSQADRRITRRLIDALALVDIRILDHFVIGDGESVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=139858 FORC22_RS00880 WP_005482037.1 189364..190038(+) (radC) [Vibrio parahaemolyticus strain FORC_022]
ATGATACTCAAAGCTTTGCCAAATGAGTCGATGCCACGAGAGAAACTTCTGCAACGTGGGCCGCAGGCGTTAACCGATGC
CGAATTACTGGCGATATTCCTCCGTACGGGCACGCAAGGCATGAACGTGATTGAGTTGGCCGATTTCCTTATTCAAGATT
TTGGTTCGCTTAGGCAGCTGTTCTCTGCTTCAGAACAAGAGTTTTGTCAGCATAAAGGGTTAGGGCAGGCCAAATATGTG
CAATTGCAAGCGGTGTTAGAAATGACTCAGCGATATTTGGCGGAAACCCTCAAGCGTGGCGACGCCTTAACCAGCCCTGA
GCAAACTAAATTGTATCTCTCCTCTATATTAAGAGACCGCCAAAGAGAGGCTTTTTACATTCTTTTCCTCGATAACCAAC
ACCGAGTAATAAAAGATGAGATTTTATTCGAAGGAACCTTGGATGCTGCATCAGTTTACCCTAGAGAAGTAGTAAAAAGA
GCCCTGCACCACAACGCGGCTGCTTTGATTTTGGCGCATAACCACCCGTCCGGTGTCGCCGAGCCAAGCCAGGCAGACCG
CAGGATTACAAGGCGATTAATTGATGCGTTGGCGCTGGTGGATATTCGTATTTTGGACCATTTCGTTATTGGCGATGGGG
AAAGTGTCTCTTTTGCTGAAAGAGGATGGATATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87T86

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

51.613

96.875

0.5
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

38.739

99.107

0.384