Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicK   Type   Regulator
Locus tag   SI82_RS06740 Genome accession   NZ_CP010783
Coordinates   1375431..1376789 (-) Length   452 a.a.
NCBI ID   WP_037583413.1    Uniprot ID   -
Organism   Streptococcus iniae strain YSFST01-82     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1370431..1381789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SI82_RS06730 (SI82_06730) rnc 1373823..1374515 (-) 693 WP_003101331.1 ribonuclease III -
  SI82_RS06735 (SI82_06735) vicX 1374618..1375427 (-) 810 WP_003101333.1 MBL fold metallo-hydrolase Regulator
  SI82_RS06740 (SI82_06740) vicK 1375431..1376789 (-) 1359 WP_037583413.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SI82_RS06745 (SI82_06745) vicR 1376782..1377492 (-) 711 WP_003101337.1 response regulator YycF Regulator
  SI82_RS06750 (SI82_06750) - 1377749..1378546 (+) 798 WP_003101338.1 amino acid ABC transporter ATP-binding protein -
  SI82_RS06755 (SI82_06755) - 1378543..1379361 (+) 819 WP_003101339.1 transporter substrate-binding domain-containing protein -
  SI82_RS06760 (SI82_06760) - 1379376..1380077 (+) 702 WP_003101340.1 amino acid ABC transporter permease -
  SI82_RS06765 (SI82_06765) - 1380093..1380740 (+) 648 WP_003101341.1 amino acid ABC transporter permease -
  SI82_RS06770 (SI82_06770) - 1380778..1381785 (-) 1008 WP_003101345.1 DUF3114 domain-containing protein -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 51522.92 Da        Isoelectric Point: 4.7779

>NTDB_id=139787 SI82_RS06740 WP_037583413.1 1375431..1376789(-) (vicK) [Streptococcus iniae strain YSFST01-82]
MTKDIIGNLSLFELAILSLLIFVAVYFVHLALRDYRNAKIIRQMSHKIRDLINGRYTDDINQKADIELMELSEQLNDLSD
VFRLSHENLAQEKNRLASILAYMSDGVLATDRSGQILMINETAQKQLNLSREEALQKNITDLLDNDTPYTYRELVSKTPV
VTLNRRDEMGEFITLRLRFALNRRESGFISGLVVVLHDMTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALK
EEIAPNFIKVSLDETNRMMRMISDLLNLSIIDNNVTTLAVEMTNFTAFMTSILNRFDLVKTQNTVAGKSYEIIRDYPITS
VWVEIDNDKMTQVIENILNNAIKYSPDGGKIGVKMKTTDTQLIISISDEGLGIPKKDLPLIFDLFYRVDKARSRAQGGTG
LGLAIAKEIIKQHNGFIWAKSDYGKGSTFTIVLPYEKDVMTDGEDDWEDDID

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=139787 SI82_RS06740 WP_037583413.1 1375431..1376789(-) (vicK) [Streptococcus iniae strain YSFST01-82]
ATGACTAAAGATATTATTGGTAACTTATCCTTATTTGAATTAGCAATTCTGTCTCTTCTTATTTTTGTTGCTGTTTATTT
TGTCCACTTGGCTCTTCGTGATTATCGAAACGCTAAGATTATTAGACAAATGAGCCATAAAATACGGGACTTGATTAATG
GTCGTTATACTGATGACATTAATCAAAAGGCAGATATTGAATTAATGGAGCTGTCTGAACAGTTAAACGACTTATCAGAT
GTTTTTCGCTTAAGCCATGAAAATTTAGCCCAGGAAAAAAATCGTTTGGCCAGTATTCTTGCCTATATGAGCGATGGTGT
CTTGGCAACTGACCGATCAGGTCAAATTTTGATGATTAATGAAACAGCACAAAAACAATTGAATTTAAGCCGTGAAGAAG
CTCTGCAAAAAAACATTACAGATTTACTTGATAATGACACTCCTTACACCTATCGGGAATTAGTGTCTAAAACACCTGTT
GTGACCTTAAACCGACGTGATGAAATGGGAGAATTTATAACCTTAAGATTGCGTTTTGCCTTAAATCGCCGTGAAAGTGG
TTTTATTTCAGGATTAGTTGTCGTTTTACATGACATGACCGAGCAAGAAAAAGAAGAACGAGAACGTCGTCTCTTTGTTT
CTAATGTTAGTCATGAATTAAGAACGCCATTAACATCTGTTAAGTCATATTTAGAGGCTTTGGATGAAGGTGCCTTAAAA
GAAGAAATTGCCCCCAATTTTATCAAGGTTTCTTTAGATGAGACAAATCGTATGATGCGGATGATTTCTGATCTTTTGAA
TTTATCAATAATTGACAATAATGTAACGACCTTAGCTGTTGAAATGACTAACTTTACAGCCTTTATGACCTCTATTTTAA
ACCGTTTTGACTTGGTTAAAACGCAAAATACAGTTGCAGGGAAAAGCTATGAAATTATTCGAGATTATCCCATTACATCT
GTATGGGTTGAGATTGATAATGATAAAATGACACAAGTCATTGAAAATATTCTTAACAATGCCATTAAGTATTCCCCAGA
TGGTGGAAAGATTGGTGTTAAGATGAAAACTACTGACACGCAATTGATTATCTCTATTTCTGATGAAGGATTGGGCATAC
CTAAAAAAGACTTGCCATTGATTTTTGATCTTTTTTACCGTGTTGATAAGGCTAGAAGTCGCGCCCAAGGTGGTACTGGC
TTAGGCTTGGCTATTGCAAAAGAAATTATTAAGCAACACAATGGCTTTATTTGGGCAAAAAGTGACTATGGCAAGGGCTC
TACATTTACCATTGTCTTGCCATATGAAAAAGATGTGATGACAGATGGAGAAGATGATTGGGAGGATGATATAGACTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)

PAS fold (PAS)

(95-198)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(326-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicK Streptococcus mutans UA159

72.639

91.372

0.664
  micB Streptococcus pneumoniae Cp1015

65.882

94.027

0.619

Multiple sequence alignment