Detailed information NTG0139709

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: APQ13_RS07720
• Genome accession: NZ_CP013237
• Coordinates: 1603400..1604491 (-)
• Length: 363 a.a.
• NCBI ID: WP_002262456.1
• Uniprot ID: Q8DRR3
• Organism: Streptococcus mutans strain NG8 isolate Dental Plaque
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1598400..1609491

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
APQ13_RS07705 (APQ13_07690)	-	1598524..1600143 (-)	1620	WP_002267089.1	ATP-binding cassette domain-containing protein	-
APQ13_RS07710 (APQ13_07695)	trpS	1600577..1601599 (+)	1023	WP_002271240.1	tryptophan--tRNA ligase	-
APQ13_RS07715 (APQ13_07700)	guaB	1601756..1603237 (+)	1482	WP_002289353.1	IMP dehydrogenase	-
APQ13_RS07720 (APQ13_07705)	recF	1603400..1604491 (-)	1092	WP_002262456.1	DNA replication/repair protein RecF	Machinery gene
APQ13_RS07725 (APQ13_07710)	yaaA	1604494..1604859 (-)	366	WP_002267087.1	S4 domain-containing protein YaaA	-
APQ13_RS07730 (APQ13_07715)	yfmF	1604938..1606185 (+)	1248	WP_002267086.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
APQ13_RS07735 (APQ13_07720)	yfmH	1606187..1607479 (+)	1293	WP_002264239.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
APQ13_RS07740 (APQ13_07725)	-	1607552..1608529 (+)	978	WP_002270375.1	helix-turn-helix domain-containing protein	-
APQ13_RS07745 (APQ13_07730)	pgsA	1608541..1609083 (+)	543	WP_002262451.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-

Sequence

Protein

• Length: 363 a.a.
• Molecular weight: 42003.21 Da
• Isoelectric Point: 9.8334

>NTDB_id=139709 APQ13_RS07720 WP_002262456.1 1603400..1604491(-) (recF) [Streptococcus mutans strain NG8 isolate Dental Plaque]
MWIEKINLKHYRNYTAIESEFSQSLNVFVGQNAQGKTNFLEAIYFLSLTRSHRTRSDKELIQFGQKELNVSGLLNRVNGK
IPLEINLSNKGRTTKINYLKQPKLSDYIGTMTVVLFAPEDLQLIKGSPSLRRKFIDIDLGQIKPIYLSDLSNYNHVLKQR
NAYLKSEKKVDTDFLFVLDEQLVDYGSKVIEHRLDFIQNLTKEADKYHFSISNQQEHLKISYLSSVKFDHKKNIRDNFLN
LLQKNRQGDIFKKNTSVGPHRDDLAFFINQMNASFGSQGQHRSLILSLKLAEIELTKTVTGDYPILLLDDVMSELDNYRQ
IKLLEGIKDNVQTFITTTSLEHLQQLPKKLKLFTINQGKVLSE

Nucleotide

• Length: 1092 bp

>NTDB_id=139709 APQ13_RS07720 WP_002262456.1 1603400..1604491(-) (recF) [Streptococcus mutans strain NG8 isolate Dental Plaque]
ATGTGGATAGAAAAAATTAATTTAAAACATTATCGCAATTATACAGCCATTGAATCTGAATTTTCCCAAAGTCTTAATGT
TTTTGTGGGACAAAATGCTCAAGGAAAAACCAATTTCCTAGAGGCTATTTATTTTTTATCTTTAACCCGCAGTCATCGAA
CACGATCTGACAAAGAACTTATTCAATTTGGTCAAAAAGAATTAAATGTTTCTGGCCTTCTTAATCGTGTCAATGGCAAA
ATTCCTCTGGAAATCAACTTATCTAATAAAGGCCGAACAACAAAAATAAATTATCTCAAACAACCTAAACTTTCAGACTA
TATTGGAACAATGACTGTTGTTCTATTTGCTCCAGAAGATCTTCAACTAATAAAAGGCTCCCCAAGTCTCAGAAGAAAGT
TTATTGACATTGATTTAGGACAAATCAAGCCTATTTACTTATCTGATTTATCAAATTATAATCATGTTCTTAAACAACGA
AACGCCTATTTAAAATCAGAGAAGAAGGTTGATACTGATTTTCTTTTCGTTCTAGATGAACAATTGGTAGATTATGGTAG
TAAGGTTATTGAGCATCGCCTTGATTTTATTCAAAATTTAACTAAAGAAGCTGATAAATATCATTTCTCTATTTCAAATC
AACAGGAACATTTAAAAATTTCCTACCTTTCTTCTGTTAAATTTGATCATAAAAAAAATATTCGTGATAACTTTTTAAAC
CTGCTACAAAAAAATCGGCAGGGTGATATTTTCAAAAAGAACACCAGTGTTGGTCCACACCGCGATGATTTAGCCTTTTT
CATCAATCAAATGAACGCTAGCTTTGGTAGTCAAGGACAACATCGCAGCCTTATTTTATCTTTAAAGCTGGCTGAGATTG
AACTTACAAAAACAGTCACTGGGGATTATCCTATTCTCTTGTTAGATGATGTCATGAGTGAACTTGATAATTATAGACAA
ATCAAACTTTTAGAAGGCATCAAAGATAATGTTCAGACCTTTATAACAACAACTAGCCTTGAACATCTTCAACAACTCCC
TAAGAAACTAAAGTTATTTACTATCAACCAAGGAAAAGTGCTATCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-357)

3D structure

• AlphaFold DB: Q8DRR3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65	99.174	0.645
recF	Bacillus subtilis subsp. subtilis str. 168	43.631	100	0.444