Detailed information NTG0139544

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: HSISS4_RS09685
• Genome accession: NZ_CP013216
• Coordinates: 2085835..2086935 (+)
• Length: 366 a.a.
• NCBI ID: WP_021144762.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain HSISS4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2080835..2091935

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HSISS4_RS09660 (HSISS4_01888)	pgsA	2081377..2081919 (-)	543	WP_021144756.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
HSISS4_RS09665 (HSISS4_01889)	-	2081932..2082789 (-)	858	WP_048790842.1	helix-turn-helix domain-containing protein	-
HSISS4_RS09670 (HSISS4_01890)	yfmH	2082848..2084125 (-)	1278	WP_021144759.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
HSISS4_RS09675 (HSISS4_01891)	yfmF	2084127..2085377 (-)	1251	WP_021144760.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
HSISS4_RS09680 (HSISS4_01892)	yaaA	2085455..2085832 (+)	378	WP_021144761.1	S4 domain-containing protein YaaA	-
HSISS4_RS09685 (HSISS4_01893)	recF	2085835..2086935 (+)	1101	WP_021144762.1	DNA replication/repair protein RecF	Machinery gene
HSISS4_RS09690 (HSISS4_01894)	guaB	2087117..2088598 (-)	1482	WP_021144763.1	IMP dehydrogenase	-
HSISS4_RS09695 (HSISS4_01895)	-	2088898..2090147 (+)	1250	Protein_1878	ISL3 family transposase	-
HSISS4_RS09700 (HSISS4_01896)	trpS	2090196..2091218 (-)	1023	WP_002883969.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42087.23 Da
• Isoelectric Point: 8.0461

>NTDB_id=139544 HSISS4_RS09685 WP_021144762.1 2085835..2086935(+) (recF) [Streptococcus salivarius strain HSISS4]
MWLEKIDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQFQQNTLKLNGIVHRHSGK
LPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQR
NAYLKSTDNVDINFLSVLDEQLSDFGARVIEHRLEFIKQLEQEADRHHSNLSNQIECLKISYESNIPLENNKVIRESFLT
TLKQNHKRDIFKKNTGVGPHRDDLTFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTGEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPDLKTFLVKNGIICEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=139544 HSISS4_RS09685 WP_021144762.1 2085835..2086935(+) (recF) [Streptococcus salivarius strain HSISS4]
ATGTGGCTCGAAAAAATTGATATTCAACACTTTAGAAATTATACTGAAGCCTCTGTGAGCTTCTCACCTCATCTCAATAT
TTTTCTTGGTCGCAATGCCCAAGGAAAAACAAATATTCTTGAGGCCATCTATTTTCTAGCATTGACACGTAGTCATCGGA
CCCGTTCAGATAAAGAACTGATTCAATTTCAACAAAATACTCTCAAACTGAACGGCATCGTGCATCGTCATAGTGGGAAG
CTACCTCTGGAAATCAGTTTATCTAATAAAGGACGCATAACAAAGGTTAACCACCTCAAACAAGCTAAATTATCCGATTA
TATCGGTCACATGACTGTGGTGCTATTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGCCTGAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTATCTCTCAGACTTATCAAGTTATAATCATGTACTCAAACAACGT
AATGCCTATCTCAAATCTACTGACAATGTAGACATTAATTTCCTCTCAGTGTTAGATGAACAGCTTTCCGATTTTGGAGC
ACGAGTTATCGAACATAGACTAGAATTTATCAAGCAATTAGAGCAGGAGGCAGATAGACATCATAGTAACCTCTCAAATC
AGATAGAGTGCCTTAAAATCTCCTACGAATCTAATATCCCACTGGAAAATAACAAAGTTATTCGCGAATCATTTTTAACC
ACGTTAAAGCAAAATCACAAAAGAGATATCTTCAAAAAGAACACTGGTGTTGGTCCACATAGGGATGATTTGACATTTTA
CATCAATGACATGAACGCATCTTTCGGCAGTCAGGGGCAGCAACGTAGCCTCATTCTTTCTTTAAAAATGGCTGAGATTG
CTCTGATAAAAAAAGTAACAGGTGAATTTCCTATTCTTCTCCTCGATGATGTCATGAGTGAGCTTGACAACCACCGTCAA
CTTAAACTGTTAGAAAGTATTGACGAAGAGGTTCAAACCTTCATGACGACAACTTCACTTGATCATCTGAGTAACCTACC
ACCCGATTTAAAGACCTTCTTAGTCAAGAATGGTATTATTTGTGAAAAACAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-345)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.084	97.814	0.637
recF	Bacillus subtilis subsp. subtilis str. 168	43.935	100	0.445