Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   HSISS4_RS02295 Genome accession   NZ_CP013216
Coordinates   460682..462667 (+) Length   661 a.a.
NCBI ID   WP_021144579.1    Uniprot ID   -
Organism   Streptococcus salivarius strain HSISS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 455682..467667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSISS4_RS02275 (HSISS4_00406) - 456011..456427 (+) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -
  HSISS4_RS02280 (HSISS4_00407) ftsW 456689..457969 (+) 1281 WP_037620423.1 cell division peptidoglycan polymerase FtsW -
  HSISS4_RS02285 (HSISS4_00408) tuf 458207..459403 (+) 1197 WP_002886182.1 elongation factor Tu -
  HSISS4_RS02290 (HSISS4_00409) tpiA 459658..460416 (+) 759 WP_002885895.1 triose-phosphate isomerase -
  HSISS4_RS02295 (HSISS4_00410) recP/tkt 460682..462667 (+) 1986 WP_021144579.1 transketolase Machinery gene
  HSISS4_RS02305 (HSISS4_00411) tmk 462956..463585 (+) 630 WP_021144578.1 dTMP kinase -
  HSISS4_RS02310 (HSISS4_00412) - 463594..464469 (+) 876 WP_021144577.1 DNA polymerase III subunit delta' -
  HSISS4_RS02315 (HSISS4_00413) yaaT 464466..465272 (+) 807 WP_021144576.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  HSISS4_RS02320 (HSISS4_00414) yabA 465259..465579 (+) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  HSISS4_RS02325 (HSISS4_00415) rsmI 465582..466448 (+) 867 WP_021144575.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70862.51 Da        Isoelectric Point: 4.7323

>NTDB_id=139474 HSISS4_RS02295 WP_021144579.1 460682..462667(+) (recP/tkt) [Streptococcus salivarius strain HSISS4]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVSMDDLKNFRQWGSKTPGHPEVDHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEAGIKFRGEAAENAWQTKFAEYE
AAYPELAAEYKVAFANEPVHVDLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQPDNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAEAGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGTSAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=139474 HSISS4_RS02295 WP_021144579.1 460682..462667(+) (recP/tkt) [Streptococcus salivarius strain HSISS4]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGACACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTACTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCAGGTCATGGTTCTGCTTTGCTTTATAGTCTCTTGCAC
CTTTCAGGCTATGATGTATCAATGGATGATTTGAAGAACTTCCGTCAATGGGGTTCTAAGACTCCGGGTCACCCTGAAGT
TGATCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGGATTGCTAATGCAGTAGGTATGGCAATGGCTG
AAGCACATTTGGCTGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCTCTCCATGGCGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCTAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATCTCACTTGATGGACCGACTTCAATGGCTTTCACTGAAGATGTTAAGGCTAAGTTTGAGGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATCGCTAAAGCAATCGAAGAAGCTAAAGCTGAGACAGAT
AAACCATCTATTATCGAAGTTAAGACAATCATTGGTTACGGAGCTGAAGGACAAGGAACATCGGCTGTCCACGGTGCTCC
AATTGGTCAAGACGGTATTGATCACGCAAAAGGTGTTTACGGTTACGATGCACCAGCATTTACAGTTCCAGATGAAGTCG
CTCGTCGTTTCGAAGCTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
GCTGCTTATCCAGAATTGGCTGCTGAATACAAGGTTGCCTTTGCGAATGAACCTGTACACGTTGACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTGTCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCTGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAACCAGACAACTATGCTGGA
CGTAATATTTGGTTCGGTGTACGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGCGT
TTATGGTGGTACTTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCTCTTCAAAACTTGCCAGTAA
CTTATGTTATGACACACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCGTGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTTTTGACACGTCAAAACTTGCCAGTCCTTGATGGTACAGCTGAAAATGCCGAAGCTG
GTGTCAATAAAGGGGCTTACATCATCTCAGAAGCTAAAGGTGATCTTGATGGTATCATCATTGCGACTGGTTCTGAAGTA
AAATTGGCTCTTGATACTCAAGCGGCTCTTGAAGCTGAAGGCGTGCATGTCCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCATATAAAGAAGAAGTCCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGGCAAATACGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTACCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAGAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.687

99.546

0.564