Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   AS52_RS15970 Genome accession   NZ_CP010586
Coordinates   3202441..3203391 (-) Length   316 a.a.
NCBI ID   WP_028414467.1    Uniprot ID   A0AAX6BLZ5
Organism   Priestia megaterium Q3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 3197441..3208391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS52_RS15940 (AS52_03296) - 3197532..3198608 (+) 1077 WP_049165514.1 PrsW family intramembrane metalloprotease -
  AS52_RS27675 - 3199079..3199219 (-) 141 WP_176343797.1 hypothetical protein -
  AS52_RS26855 - 3199460..3199732 (-) 273 Protein_3192 manganese catalase family protein -
  AS52_RS15955 (AS52_03298) - 3199769..3200725 (-) 957 WP_033580631.1 siderophore ABC transporter substrate-binding protein -
  AS52_RS15960 (AS52_03299) - 3200749..3201507 (-) 759 WP_028414465.1 ABC transporter ATP-binding protein -
  AS52_RS15965 (AS52_03300) - 3201501..3202448 (-) 948 WP_034267834.1 iron chelate uptake ABC transporter family permease subunit -
  AS52_RS15970 (AS52_03301) ceuB 3202441..3203391 (-) 951 WP_028414467.1 ABC transporter permease Machinery gene
  AS52_RS15975 - 3203622..3203756 (-) 135 WP_255219778.1 hypothetical protein -
  AS52_RS15980 (AS52_03302) - 3203995..3204801 (-) 807 WP_028414468.1 cell wall hydrolase -
  AS52_RS15985 (AS52_03303) - 3205164..3205418 (+) 255 WP_013057893.1 hypothetical protein -
  AS52_RS27680 (AS52_03304) - 3205500..3205664 (-) 165 WP_013057894.1 hypothetical protein -
  AS52_RS15990 (AS52_03305) - 3205968..3206531 (-) 564 WP_034267823.1 NAD(P)H-dependent oxidoreductase -
  AS52_RS15995 (AS52_03306) lepB 3206824..3207384 (-) 561 WP_028414470.1 signal peptidase I -
  AS52_RS16000 (AS52_03307) - 3207471..3207830 (-) 360 WP_028414471.1 DUF4440 domain-containing protein -

Sequence


Protein


Download         Length: 316 a.a.        Molecular weight: 34953.16 Da        Isoelectric Point: 9.9188

>NTDB_id=139434 AS52_RS15970 WP_028414467.1 3202441..3203391(-) (ceuB) [Priestia megaterium Q3]
MKFYQLILVFAVLAVSSLFVGVQDLSAMDLFHLTKEESQTLFFSRFPRLLSIIMAGMSLSICGLIMQQITRNKFVSPTTA
GTMDWARLGVLISLLVFASASPLLKMSIAFIFSLAGNLLFMRILDRIKFNDTIYIPLVGLMLGSIVSSLATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYLYADKFTVAGMGESFSINLGVKYKQIVNIGLVIVSLITSITILTVGM
LPFLGLIIPNIVSIYRGDHLRKSLPHTAVLGAVFVLACDILGRVIIFPYEVSIGLMVGVIGSAIFLFMLIRRGRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=139434 AS52_RS15970 WP_028414467.1 3202441..3203391(-) (ceuB) [Priestia megaterium Q3]
TTGAAGTTTTATCAGTTAATTCTTGTGTTTGCTGTACTAGCGGTTTCGTCTCTTTTTGTAGGAGTACAAGACCTGTCAGC
GATGGATCTGTTTCATTTAACAAAAGAAGAAAGCCAAACGCTGTTTTTTAGTCGTTTTCCTAGGCTTTTGAGTATTATTA
TGGCGGGAATGAGCCTTAGTATTTGCGGGTTAATTATGCAGCAAATTACGCGAAATAAGTTTGTCTCTCCAACAACTGCA
GGAACGATGGACTGGGCAAGACTTGGTGTGTTGATTTCTCTACTAGTATTTGCTTCAGCAAGTCCTCTATTAAAAATGAG
CATTGCTTTCATTTTCTCACTTGCGGGCAATCTATTGTTTATGAGAATACTAGACAGAATTAAATTTAACGATACGATTT
ATATTCCACTAGTTGGTTTAATGCTCGGCAGTATCGTAAGTTCCCTAGCTACCTTCATCGCTTACAAATACGATTTGATT
CAAAACCTTTCTTCATGGCTGCAAGGCGACTTTTCGCTAGTAGTCAAAGGGCGATATGAACTTTTATACCTGAGTATACC
GCTCTTAATAATTGCTTATCTTTACGCAGATAAGTTCACGGTTGCTGGTATGGGAGAAAGCTTTTCAATCAATTTAGGCG
TGAAATACAAACAAATCGTAAACATTGGATTAGTCATTGTTTCGCTTATTACGTCGATTACGATTTTGACCGTTGGCATG
CTGCCTTTTTTAGGATTAATCATCCCAAATATCGTATCGATTTACCGTGGAGATCATTTACGAAAAAGCCTGCCTCATAC
AGCGGTGCTTGGAGCTGTATTCGTACTTGCGTGCGATATTTTAGGCAGAGTCATTATTTTCCCTTATGAAGTTTCTATTG
GGTTAATGGTCGGTGTAATAGGAAGTGCGATCTTTCTTTTTATGCTGATAAGGAGAGGTCGTTATGCATAA

Domains


Predicted by InterproScan.

(10-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.333

94.937

0.497


Multiple sequence alignment