Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   SB45_RS16230 Genome accession   NZ_CP010556
Coordinates   3372753..3373442 (-) Length   229 a.a.
NCBI ID   WP_196769287.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-H15     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3367753..3378442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB45_RS16195 (SB45_16195) fliW 3367844..3368275 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  SB45_RS16200 (SB45_16200) - 3368305..3368874 (-) 570 WP_024085861.1 DUF6470 family protein -
  SB45_RS16205 (SB45_16205) flgL 3368965..3369882 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  SB45_RS16210 (SB45_16210) flgK 3369894..3371411 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  SB45_RS16215 (SB45_16215) - 3371427..3371909 (-) 483 WP_003151394.1 flagellar protein FlgN -
  SB45_RS16220 (SB45_16220) flgM 3371924..3372190 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  SB45_RS16225 (SB45_16225) - 3372260..3372679 (-) 420 WP_043867469.1 TIGR03826 family flagellar region protein -
  SB45_RS16230 (SB45_16230) comFC 3372753..3373442 (-) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  SB45_RS16235 (SB45_16235) - 3373448..3373732 (-) 285 WP_003151389.1 competence protein ComFB -
  SB45_RS16240 (SB45_16240) comFA 3373790..3375175 (-) 1386 WP_043867470.1 DEAD/DEAH box helicase Machinery gene
  SB45_RS16245 (SB45_16245) - 3375283..3376131 (-) 849 WP_043867471.1 DegV family protein -
  SB45_RS16250 (SB45_16250) degU 3376229..3376918 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  SB45_RS16255 (SB45_16255) degS 3376995..3378158 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25265.91 Da        Isoelectric Point: 8.4880

>NTDB_id=139287 SB45_RS16230 WP_196769287.1 3372753..3373442(-) (comFC) [Bacillus velezensis strain L-H15]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGSVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKSAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=139287 SB45_RS16230 WP_196769287.1 3372753..3373442(-) (comFC) [Bacillus velezensis strain L-H15]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCTCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAATCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(143-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment