Detailed information NTG0139230

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: SB45_RS01860
• Genome accession: NZ_CP010556
• Coordinates: 367117..368265 (+)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus velezensis strain L-H15
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 362117..373265

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SB45_RS01840 (SB45_01840)	-	362514..363197 (-)	684	WP_043866832.1	ABC transporter ATP-binding protein	-
SB45_RS01845 (SB45_01845)	-	363212..364648 (-)	1437	WP_043866833.1	ABC transporter permease	-
SB45_RS01850 (SB45_01850)	-	364861..365544 (+)	684	WP_015388707.1	response regulator transcription factor	-
SB45_RS01855 (SB45_01855)	-	365531..366964 (+)	1434	WP_161625271.1	HAMP domain-containing sensor histidine kinase	-
SB45_RS01860 (SB45_01860)	rapC	367117..368265 (+)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
SB45_RS01865 (SB45_01865)	phrC	368249..368368 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
SB45_RS18955	-	368519..368614 (-)	96	WP_012116800.1	YjcZ family sporulation protein	-
SB45_RS01870 (SB45_01870)	-	368709..370073 (-)	1365	WP_014304341.1	aspartate kinase	-
SB45_RS01875 (SB45_01875)	ceuB	370488..371441 (+)	954	WP_003156332.1	ABC transporter permease	Machinery gene
SB45_RS01880 (SB45_01880)	-	371431..372378 (+)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
SB45_RS01885 (SB45_01885)	-	372372..373130 (+)	759	WP_003156330.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=139230 SB45_RS01860 WP_014304340.1 367117..368265(+) (rapC) [Bacillus velezensis strain L-H15]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=139230 SB45_RS01860 WP_014304340.1 367117..368265(+) (rapC) [Bacillus velezensis strain L-H15]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTCGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568