Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   RU53_RS02715 Genome accession   NZ_CP010526
Coordinates   571012..571581 (+) Length   189 a.a.
NCBI ID   WP_000872864.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus ST772-MRSA-V strain DAR4145     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 566012..576581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RU53_RS02690 (RU53_516) cysE 567225..567872 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  RU53_RS02695 (RU53_517) cysS 567856..569256 (+) 1401 WP_000631974.1 cysteine--tRNA ligase -
  RU53_RS02700 (RU53_518) - 569249..569653 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  RU53_RS02705 (RU53_519) rlmB 569661..570407 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  RU53_RS02710 (RU53_520) - 570407..570931 (+) 525 WP_000664738.1 NYN domain-containing protein -
  RU53_RS02715 (RU53_521) sigH 571012..571581 (+) 570 WP_000872864.1 sigma-70 family RNA polymerase sigma factor Regulator
  RU53_RS14775 rpmG 571696..571839 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  RU53_RS02720 (RU53_522) secE 571895..572077 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  RU53_RS02725 (RU53_523) nusG 572090..572638 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  RU53_RS02730 (RU53_524) rplK 572819..573241 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  RU53_RS02735 (RU53_525) rplA 573449..574141 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  RU53_RS02740 (RU53_527) rplJ 574413..574913 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  RU53_RS02745 (RU53_528) rplL 574956..575324 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  RU53_RS02750 (RU53_529) - 575499..576107 (+) 609 WP_000020302.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=139062 RU53_RS02715 WP_000872864.1 571012..571581(+) (sigH) [Staphylococcus aureus subsp. aureus ST772-MRSA-V strain DAR4145]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLKPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNQLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=139062 RU53_RS02715 WP_000872864.1 571012..571581(+) (sigH) [Staphylococcus aureus subsp. aureus ST772-MRSA-V strain DAR4145]
TTGAAATACGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTAAAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATCAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment