Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | SC10_RS13480 | Genome accession | NZ_CP010524 |
| Coordinates | 2731248..2731583 (+) | Length | 111 a.a. |
| NCBI ID | WP_023855185.1 | Uniprot ID | - |
| Organism | Bacillus paralicheniformis strain BL-09 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2726248..2736583
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SC10_RS13455 (SC10_B2orf04077) | gcvT | 2726678..2727772 (-) | 1095 | WP_035338369.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| SC10_RS13465 (SC10_B2orf04079) | - | 2728367..2730046 (+) | 1680 | WP_020452163.1 | DEAD/DEAH box helicase | - |
| SC10_RS13470 (SC10_B2orf04080) | - | 2730053..2730847 (+) | 795 | WP_020452164.1 | YqhG family protein | - |
| SC10_RS13475 (SC10_B2orf04082) | sinI | 2731038..2731214 (+) | 177 | WP_023855184.1 | anti-repressor SinI | Regulator |
| SC10_RS13480 (SC10_B2orf04083) | sinR | 2731248..2731583 (+) | 336 | WP_023855185.1 | transcriptional regulator SinR | Regulator |
| SC10_RS13485 (SC10_B2orf04085) | tasA | 2731688..2732482 (-) | 795 | WP_020452167.1 | biofilm matrix protein TasA | - |
| SC10_RS13490 (SC10_B2orf04086) | sipW | 2732555..2733139 (-) | 585 | WP_035338370.1 | signal peptidase I SipW | - |
| SC10_RS13495 (SC10_B2orf04089) | tapA | 2733136..2733864 (-) | 729 | WP_020452169.1 | amyloid fiber anchoring/assembly protein TapA | - |
| SC10_RS13500 (SC10_B2orf04091) | - | 2734142..2734462 (+) | 321 | WP_023855188.1 | YqzG/YhdC family protein | - |
| SC10_RS13505 (SC10_B2orf04092) | - | 2734492..2734674 (-) | 183 | WP_020452171.1 | YqzE family protein | - |
| SC10_RS13510 (SC10_B2orf04093) | comGG | 2734763..2735128 (-) | 366 | WP_025811163.1 | competence type IV pilus minor pilin ComGG | - |
| SC10_RS13515 (SC10_B2orf04094) | comGF | 2735140..2735622 (-) | 483 | WP_230588654.1 | competence type IV pilus minor pilin ComGF | - |
| SC10_RS13520 (SC10_B2orf04095) | comGE | 2735537..2735884 (-) | 348 | WP_025811161.1 | competence type IV pilus minor pilin ComGE | - |
| SC10_RS13525 (SC10_B2orf04096) | comGD | 2735868..2736305 (-) | 438 | WP_020452175.1 | competence type IV pilus minor pilin ComGD | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12962.60 Da Isoelectric Point: 7.0171
>NTDB_id=138974 SC10_RS13480 WP_023855185.1 2731248..2731583(+) (sinR) [Bacillus paralicheniformis strain BL-09]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=138974 SC10_RS13480 WP_023855185.1 2731248..2731583(+) (sinR) [Bacillus paralicheniformis strain BL-09]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |