Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SC10_RS02420 Genome accession   NZ_CP010524
Coordinates   496437..497390 (+) Length   317 a.a.
NCBI ID   WP_043054058.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain BL-09     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 491437..502390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC10_RS02405 (SC10_B2orf00661) - 491484..492911 (+) 1428 WP_035337212.1 sensor histidine kinase -
  SC10_RS23250 - 492944..493897 (-) 954 WP_373368590.1 methyl-accepting chemotaxis protein -
  SC10_RS23255 - 493895..494677 (-) 783 Protein_464 MCP four helix bundle domain-containing protein -
  SC10_RS02415 (SC10_B2orf00665) - 494798..496159 (-) 1362 WP_020450169.1 aspartate kinase -
  SC10_RS02420 (SC10_B2orf00666) ceuB 496437..497390 (+) 954 WP_043054058.1 ABC transporter permease Machinery gene
  SC10_RS02425 (SC10_B2orf00668) - 497380..498324 (+) 945 WP_020450171.1 iron chelate uptake ABC transporter family permease subunit -
  SC10_RS02430 (SC10_B2orf00669) - 498324..499082 (+) 759 WP_020450172.1 ABC transporter ATP-binding protein -
  SC10_RS02435 (SC10_B2orf00671) - 499097..500044 (+) 948 WP_035337207.1 siderophore ABC transporter substrate-binding protein -
  SC10_RS02440 (SC10_B2orf00674) - 500226..501647 (-) 1422 WP_026580547.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35123.51 Da        Isoelectric Point: 10.1004

>NTDB_id=138942 SC10_RS02420 WP_043054058.1 496437..497390(+) (ceuB) [Bacillus paralicheniformis strain BL-09]
MKLRYLLLMLIILSISSIFIGVKELSPLDLFRFNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFMAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLNYKRVVNIGLIIVSIISSVVILTVGT
LLFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=138942 SC10_RS02420 WP_043054058.1 496437..497390(+) (ceuB) [Bacillus paralicheniformis strain BL-09]
ATGAAATTACGATACTTATTGCTAATGCTCATCATTCTTTCAATCAGCTCGATATTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGATCTTTTCCGCTTTAACGAGGACGAAATTCAAACGCTTTACATAAGCAGAATTCCGCGCTTGATTAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATTTGCGGGCTGATCATGCAGCAGCTAACGCGCAATAAATTTGTTTCACCGACCACCGCT
GGAACGATGGATTGGGCGAGGCTCGGTGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGAATTGTGGTTAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGTTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATCT
TCATCCCTCTCGTCGGTATGATGCTCGGAAGTGTTGTCAGCGCCATCTCCACTTTCATGGCTTATCAGTACAATATCATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTGGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTTACGTTGGCCGGGATGGGGGAGTCTTTTTCCATCAATCTTGGAT
TGAATTATAAGCGGGTGGTCAATATCGGATTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGGTCGGCACG
CTTCTCTTTTTGGGATTGATCATCCCGAACATCGTGTCCATCTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCATAC
GGCGGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.266

99.685

0.511

Multiple sequence alignment