Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PGS_RS11120 Genome accession   NZ_CP013131
Coordinates   1852754..1853152 (-) Length   132 a.a.
NCBI ID   WP_237073567.1    Uniprot ID   -
Organism   Porphyromonas gingivalis A7A1-28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1847754..1858152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGS_RS10325 (PGS_00016400) - 1848192..1848382 (-) 191 Protein_1589 DUF4372 domain-containing protein -
  PGS_RS07910 (PGS_00016430) - 1848928..1849812 (+) 885 WP_058019299.1 DUF3078 domain-containing protein -
  PGS_RS07915 (PGS_00016440) - 1850269..1851354 (+) 1086 WP_058019300.1 IS5 family transposase -
  PGS_RS11115 - 1851379..1851502 (+) 124 Protein_1592 DNA methylase -
  PGS_RS07920 (PGS_00016450) - 1851602..1851982 (-) 381 WP_013815175.1 RidA family protein -
  PGS_RS07925 (PGS_00016460) rlmB 1852008..1852757 (-) 750 WP_012458528.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  PGS_RS11120 recN 1852754..1853152 (-) 399 WP_237073567.1 hypothetical protein Machinery gene
  PGS_RS07930 (PGS_00016480) - 1853098..1854408 (-) 1311 WP_237073569.1 DNA repair protein RecN -
  PGS_RS07935 (PGS_00016490) - 1854423..1855331 (-) 909 WP_058019301.1 DUF4835 family protein -
  PGS_RS07940 (PGS_00016500) coaBC 1855328..1856542 (-) 1215 WP_058019302.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  PGS_RS07945 (PGS_00016510) - 1856568..1857347 (-) 780 WP_058019303.1 3'-5' exonuclease -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14576.81 Da        Isoelectric Point: 5.0133

>NTDB_id=138916 PGS_RS11120 WP_237073567.1 1852754..1853152(-) (recN) [Porphyromonas gingivalis A7A1-28]
MEPEPVSEIASGGEIARLMLCLKALIADKRSLPAIVFDEIDTGVSGEVADRMGEIMAHMGQGMQVLAITHLPQIAARGER
HYFVYKDETGERARTFIRELTPEERIREIARMQSGNNLTDVALAAAKELLAR

Nucleotide


Download         Length: 399 bp        

>NTDB_id=138916 PGS_RS11120 WP_237073567.1 1852754..1853152(-) (recN) [Porphyromonas gingivalis A7A1-28]
ATGGAGCCGGAGCCGGTATCGGAGATTGCCTCAGGAGGAGAGATTGCTCGCCTGATGTTGTGTCTGAAAGCTCTCATTGC
GGACAAACGTTCTTTGCCGGCCATCGTTTTCGATGAGATAGATACCGGCGTATCGGGTGAAGTGGCTGACCGCATGGGAG
AGATAATGGCTCATATGGGACAAGGTATGCAAGTGCTCGCCATCACGCATCTGCCCCAAATAGCAGCTCGAGGGGAGCGG
CACTACTTTGTCTATAAAGATGAAACAGGCGAACGGGCACGCACCTTCATTCGTGAATTGACTCCCGAAGAGCGAATACG
AGAGATAGCCCGTATGCAAAGCGGAAATAACCTGACGGATGTGGCCTTGGCCGCAGCCAAAGAGCTTTTAGCAAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

41.667

100

0.417
  recN Neisseria gonorrhoeae strain FA1090

42.969

96.97

0.417