Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RL73_RS02070 Genome accession   NZ_CP010522
Coordinates   486809..487315 (+) Length   168 a.a.
NCBI ID   WP_015272802.1    Uniprot ID   L0EU44
Organism   Liberibacter crescens strain BT-0     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 481809..492315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RL73_RS02060 (RL73_02055) - 482280..483716 (+) 1437 WP_051012153.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  RL73_RS02065 (RL73_02060) uvrA 483745..486612 (-) 2868 WP_015272801.1 excinuclease ABC subunit UvrA -
  RL73_RS02070 (RL73_02065) ssb 486809..487315 (+) 507 WP_015272802.1 single-stranded DNA-binding protein Machinery gene
  RL73_RS02075 (RL73_02070) gyrA 487549..490302 (+) 2754 WP_015272803.1 DNA gyrase subunit A -
  RL73_RS02080 (RL73_02075) coaD 490822..491319 (+) 498 WP_041771005.1 pantetheine-phosphate adenylyltransferase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 19277.26 Da        Isoelectric Point: 4.9255

>NTDB_id=138906 RL73_RS02070 WP_015272802.1 486809..487315(+) (ssb) [Liberibacter crescens strain BT-0]
MSGSINKVIIIGNLGADPEIRRTQDGRMIVSIRIATSETWRDRNTNERREKTEWHNVVIFNEGLCKIAEQYLTKGSKVYI
EGQLQTRKWKDQNGNDRYTTEIVLQGFNSTLTMLDTRGENNNFNKNRSSGYMKSNDEFGENSVNGGSTLDREGRDDIFSN
ELDDEIPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=138906 RL73_RS02070 WP_015272802.1 486809..487315(+) (ssb) [Liberibacter crescens strain BT-0]
ATGTCAGGTAGTATAAATAAAGTTATTATTATAGGCAATCTTGGTGCAGATCCTGAAATACGGCGCACGCAAGACGGACG
GATGATAGTGAGTATTCGTATTGCTACCTCAGAGACTTGGCGAGATCGTAATACAAATGAACGTCGTGAAAAAACAGAAT
GGCATAATGTCGTTATTTTTAATGAAGGTTTGTGTAAGATTGCCGAGCAATATTTAACTAAGGGTTCTAAAGTATATATT
GAGGGTCAACTGCAAACTAGAAAATGGAAAGATCAAAATGGCAATGATCGTTATACCACTGAGATTGTATTGCAGGGATT
TAATTCAACTCTTACTATGCTTGATACACGAGGGGAAAATAATAACTTTAATAAAAATCGTAGTTCAGGATATATGAAAA
GTAATGATGAATTTGGAGAAAATTCTGTTAATGGAGGCAGTACGTTGGATCGTGAAGGAAGAGACGATATTTTTTCGAAT
GAACTTGACGACGAGATACCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB L0EU44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.624

100

0.494
  ssb Vibrio cholerae strain A1552

56.303

70.833

0.399

Multiple sequence alignment