Detailed information NTG0138853

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: DW68_RS15475
• Genome accession: NZ_CP013124
• Coordinates: 3318668..3320881 (-)
• Length: 737 a.a.
• NCBI ID: WP_017361508.1
• Uniprot ID: A0ABM5VYI9
• Organism: Ectopseudomonas mendocina S5.2
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3313668..3325881

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DW68_RS15440 (DW68_015440)	murB	3314098..3315117 (-)	1020	WP_017361503.1	UDP-N-acetylmuramate dehydrogenase	-
DW68_RS15445 (DW68_015445)	-	3315114..3315578 (-)	465	WP_017361504.1	low molecular weight protein-tyrosine-phosphatase	-
DW68_RS15450 (DW68_015450)	kdsB	3315578..3316342 (-)	765	WP_017361505.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
DW68_RS15455 (DW68_015455)	-	3316343..3316528 (-)	186	WP_013714804.1	Trm112 family protein	-
DW68_RS15460 (DW68_015460)	lpxK	3316551..3317552 (-)	1002	WP_017361506.1	tetraacyldisaccharide 4'-kinase	-
DW68_RS15465 (DW68_015465)	-	3317553..3317981 (-)	429	WP_017361507.1	biopolymer transporter ExbD	-
DW68_RS15470 (DW68_015470)	exbB	3317978..3318610 (-)	633	WP_013714801.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
DW68_RS15475 (DW68_015475)	comA	3318668..3320881 (-)	2214	WP_017361508.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
DW68_RS15480 (DW68_015480)	-	3321020..3321547 (+)	528	WP_013714799.1	DUF2062 domain-containing protein	-
DW68_RS15485 (DW68_015485)	-	3321581..3322825 (-)	1245	WP_017361509.1	lipoprotein-releasing ABC transporter permease subunit	-
DW68_RS15490 (DW68_015490)	lolD	3322825..3323526 (-)	702	WP_017361510.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
DW68_RS15495 (DW68_015495)	-	3323531..3324778 (-)	1248	WP_017361511.1	lipoprotein-releasing ABC transporter permease subunit	-
DW68_RS15500 (DW68_015500)	-	3325069..3325635 (+)	567	WP_013714794.1	PilZ domain-containing protein	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 80074.10 Da
• Isoelectric Point: 8.6142

>NTDB_id=138853 DW68_RS15475 WP_017361508.1 3318668..3320881(-) (comA) [Ectopseudomonas mendocina S5.2]
MLALALGLLSLRFLPSLPPGWLLLVAACVGLALLLSRLYPLGFFLLGLAWACNSAQWALDDRLGPELDGRTLWLEGRVVG
LPEVSDGVVRFLLEDAHSRRAELPKRLRVAWYDGPTVQGGERWRLAVNLKRPHGLVNPQSFDYEAWLLAQRIGATGTIKS
GQRLAPASGLGSWRDSLRQRLLAAPAVEREGAIAALVLGDGSGLSTEDWRLLQHTGTVHLMVISGQHIGLLAGFLYGLVA
LLAKLGAWPARWPWLPCACALALGGALTYGLLAGFEVPVRRACVMVALVLLWRMRFRHLGAWWPLLLALIVVLLLEPLAS
LQPGFWLSFSAVAILALVFGGRLGVWDWWRGLTRAQWTMAIGLLPMMLVLGLPVSSSGPLANLIAVPWVGLVVVPLALLG
TLLLPIPMLGEGLLWLAGGALHLLFELLGIIAGWLPAWLPSVLPLWAWWLAAAGALLLLLPAGVPLRLPGLALLLPALLL
PAPHLDDGRADIWVLDVGQGLAVLVRTREHALLYDAGPRFGDFDTGERIVLPSLRALNLRQLDVMLLSHADNDHAGGAAA
IKAGMPVSRVVSGEPRRLADALGAEACESGQSWQWNEVVFRLWQWERASSGNQLSCVLQIEAAGERLLLTGDIDVQAERA
LMQADFPLSSQWLLAPHHGSRTSSSQAFIDAVGAQHVLITRSRHNAFGHPHPQVLERYRAAGVLVHDTALDGALHLRLGE
HGAARALRREPRFWREK

Nucleotide

• Length: 2214 bp

>NTDB_id=138853 DW68_RS15475 WP_017361508.1 3318668..3320881(-) (comA) [Ectopseudomonas mendocina S5.2]
ATGTTGGCGCTGGCCTTGGGGCTGCTCAGCTTGCGCTTTCTACCGAGCCTGCCGCCAGGCTGGCTGTTGCTGGTTGCAGC
TTGTGTCGGCCTGGCTTTGCTGCTCTCGCGTCTCTATCCGCTGGGGTTCTTTTTGCTGGGGCTGGCCTGGGCCTGCAATT
CTGCGCAGTGGGCGCTGGATGATCGCCTCGGCCCTGAGCTCGACGGTCGCACGCTATGGCTGGAAGGGCGGGTGGTCGGA
TTGCCCGAGGTATCCGATGGTGTTGTGCGCTTCCTGCTGGAGGATGCGCACTCGCGTCGTGCCGAGCTGCCAAAAAGGTT
GCGGGTGGCCTGGTATGACGGGCCGACAGTGCAGGGCGGCGAGCGCTGGCGTCTGGCGGTCAACCTGAAGCGGCCGCATG
GCCTGGTCAATCCGCAGAGCTTCGACTACGAAGCCTGGTTGCTGGCGCAGCGTATCGGTGCCACAGGCACGATCAAATCC
GGTCAGCGCCTTGCTCCAGCTTCGGGCCTGGGCAGTTGGCGTGACAGTCTGCGCCAGCGCTTGTTGGCAGCGCCGGCTGT
TGAGCGCGAAGGCGCCATCGCTGCGTTGGTACTGGGCGACGGTTCTGGCTTGAGCACCGAAGATTGGCGCCTGTTGCAGC
ACACCGGCACGGTGCACCTGATGGTCATTTCCGGGCAGCACATCGGACTGCTGGCCGGCTTTCTCTATGGTTTGGTGGCC
TTGCTGGCCAAGCTCGGCGCATGGCCGGCGCGTTGGCCATGGCTACCTTGCGCTTGTGCTCTGGCGCTGGGCGGGGCCTT
GACCTATGGCTTGCTGGCGGGCTTCGAGGTGCCGGTGCGCAGGGCTTGCGTGATGGTCGCGTTGGTGCTGCTATGGCGCA
TGCGCTTTCGTCATCTTGGTGCGTGGTGGCCATTGTTGCTGGCCTTGATCGTGGTTCTGCTGCTGGAGCCGCTGGCATCG
TTGCAGCCGGGTTTCTGGTTGTCATTTTCGGCGGTGGCGATTCTGGCTCTGGTGTTTGGCGGTCGACTTGGCGTCTGGGA
TTGGTGGCGCGGGCTCACGCGTGCGCAATGGACCATGGCCATCGGCCTGTTGCCGATGATGTTAGTCCTCGGCCTGCCGG
TCAGCAGCAGCGGGCCGTTGGCCAATCTGATCGCCGTGCCCTGGGTCGGATTGGTGGTGGTGCCTCTGGCCTTGCTGGGC
ACCTTGCTGCTGCCTATACCAATGCTGGGCGAAGGGCTGTTGTGGCTGGCCGGTGGTGCGCTGCACCTGCTGTTCGAGTT
GCTCGGCATCATCGCCGGCTGGCTACCCGCCTGGTTGCCGAGCGTTCTGCCGCTGTGGGCATGGTGGCTGGCGGCAGCTG
GTGCTTTGCTGCTCCTTTTGCCGGCCGGGGTGCCGCTGCGGTTGCCCGGTCTTGCGCTGTTGTTGCCCGCATTGTTATTG
CCAGCGCCGCATCTGGATGATGGTCGCGCCGACATCTGGGTGCTGGATGTGGGGCAAGGGCTGGCGGTGCTGGTGCGTAC
CCGAGAGCATGCTCTGCTGTACGACGCTGGGCCGCGCTTTGGTGATTTCGATACCGGTGAGCGCATCGTCCTGCCCTCGT
TGCGGGCGCTGAACCTCAGGCAGCTCGACGTGATGCTGCTCAGCCATGCCGATAACGATCATGCTGGCGGCGCGGCCGCG
ATCAAGGCCGGTATGCCGGTATCGAGGGTGGTCAGTGGTGAACCGCGAAGGCTGGCCGATGCGCTCGGCGCCGAAGCGTG
CGAGTCAGGACAAAGCTGGCAATGGAACGAGGTGGTCTTCAGGCTGTGGCAGTGGGAACGCGCCAGCTCCGGCAACCAGC
TGTCGTGCGTATTGCAGATAGAGGCTGCGGGCGAACGCCTGCTATTGACCGGCGATATCGACGTACAGGCCGAGCGGGCG
CTGATGCAGGCCGACTTTCCCCTGTCTTCGCAGTGGCTGCTGGCCCCTCATCATGGCAGTCGCACCTCGTCCAGCCAGGC
GTTCATCGATGCGGTTGGTGCGCAGCATGTGCTGATTACCCGCAGCCGCCACAATGCCTTCGGCCATCCTCATCCGCAGG
TGCTGGAGCGTTATCGGGCAGCAGGCGTGTTGGTCCATGACACGGCGCTCGATGGCGCGCTGCATCTGCGCCTGGGCGAG
CATGGCGCAGCGCGGGCATTGCGACGCGAGCCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterProScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-672)

• Competence protein (Competence) (196-460)

• Domain of unknown function (DUF4131) (DUF4131) (17-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	67.967	97.422	0.662
comA	Ralstonia pseudosolanacearum GMI1000	36.205	100	0.393