Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   RC46_RS02190 Genome accession   NZ_CP010509
Coordinates   399447..400097 (-) Length   216 a.a.
NCBI ID   WP_059110965.1    Uniprot ID   A0A5T1IZM1
Organism   Campylobacter jejuni strain CJ677CC540     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 394447..405097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC46_RS02155 (RC46_02160) - 394824..395828 (+) 1005 WP_079756561.1 hypothetical protein -
  RC46_RS02160 (RC46_02165) tlyA 395825..396586 (+) 762 WP_002931934.1 TlyA family RNA methyltransferase -
  RC46_RS02165 (RC46_02170) ribF 396552..397406 (+) 855 WP_002931935.1 bifunctional riboflavin kinase/FAD synthetase -
  RC46_RS02170 (RC46_02175) cmoA 397393..398103 (+) 711 WP_072225838.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  RC46_RS02175 (RC46_02180) - 398093..398314 (-) 222 WP_072225837.1 EexN family lipoprotein -
  RC46_RS02180 (RC46_02185) - 398305..398745 (-) 441 WP_002931936.1 EexN family lipoprotein -
  RC46_RS02185 (RC46_02190) - 398804..399436 (-) 633 WP_002861298.1 trimeric intracellular cation channel family protein -
  RC46_RS02190 (RC46_02195) CJE0566 399447..400097 (-) 651 WP_059110965.1 DNA/RNA non-specific endonuclease Regulator
  RC46_RS02195 (RC46_02200) nth 400094..400720 (-) 627 WP_002931938.1 endonuclease III -
  RC46_RS02200 (RC46_02205) peb4 400801..401622 (+) 822 WP_002931939.1 peptidylprolyl isomerase PEB4 -
  RC46_RS02205 (RC46_02210) fbaA 401622..402686 (+) 1065 WP_002931943.1 class II fructose-bisphosphate aldolase -
  RC46_RS02210 (RC46_02215) - 402781..404223 (+) 1443 WP_002931946.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25441.22 Da        Isoelectric Point: 9.7432

>NTDB_id=138777 RC46_RS02190 WP_059110965.1 399447..400097(-) (CJE0566) [Campylobacter jejuni strain CJ677CC540]
MKIFIFLLAIFLNIFALESYKPSAVFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKNKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNIIWNEIEQRERNLALKFQSIEVLN
LVLYDKEPQYIKNHIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=138777 RC46_RS02190 WP_059110965.1 399447..400097(-) (CJE0566) [Campylobacter jejuni strain CJ677CC540]
ATGAAAATTTTCATCTTTTTACTCGCTATATTTCTTAATATTTTCGCCTTAGAATCTTACAAGCCTAGTGCTGTTTTTTC
TTCTTATTTTAACAACATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GTACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAAATAAACAAATTAAAAAACGTCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGCGGCTACACGCGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCCCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCGCAAA
TAAATAATATAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTGGCTTTAAAATTTCAAAGTATTGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCATATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(23-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1IZM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

71.066

91.204

0.648
  CJE1441 Campylobacter jejuni RM1221

70.051

91.204

0.639

Multiple sequence alignment