Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   RB99_RS04745 Genome accession   NZ_CP010502
Coordinates   882248..882898 (-) Length   216 a.a.
NCBI ID   WP_048818573.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC014     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 869541..899729 882248..882898 within 0


Gene organization within MGE regions


Location: 869541..899729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RB99_RS04640 (RB99_04650) - 869541..870743 (+) 1203 WP_038402048.1 site-specific integrase -
  RB99_RS04645 (RB99_04655) - 870740..870910 (-) 171 WP_002864902.1 helix-turn-helix domain-containing protein -
  RB99_RS04650 (RB99_04660) - 870903..871445 (-) 543 WP_048818557.1 pentapeptide repeat-containing protein -
  RB99_RS04655 (RB99_04665) - 871447..872154 (-) 708 WP_048818558.1 antA/AntB antirepressor family protein -
  RB99_RS09105 - 872248..872391 (-) 144 WP_153575704.1 hypothetical protein -
  RB99_RS09230 - 872460..872615 (-) 156 WP_194717241.1 hypothetical protein -
  RB99_RS09110 - 872655..873134 (-) 480 WP_153575705.1 helix-turn-helix transcriptional regulator -
  RB99_RS04665 (RB99_04675) - 873134..874171 (-) 1038 WP_048818559.1 RelA/SpoT domain-containing protein -
  RB99_RS04670 (RB99_04680) - 874209..874445 (-) 237 WP_048818560.1 hypothetical protein -
  RB99_RS04675 (RB99_04685) - 874455..874748 (-) 294 WP_038401075.1 hypothetical protein -
  RB99_RS04680 (RB99_04690) - 874784..875536 (-) 753 WP_059116721.1 site-specific DNA-methyltransferase -
  RB99_RS04685 (RB99_04695) - 875538..875795 (-) 258 WP_059116722.1 hypothetical protein -
  RB99_RS04690 (RB99_04700) - 875776..876471 (-) 696 WP_059116723.1 hypothetical protein -
  RB99_RS04695 (RB99_04705) - 876471..877403 (-) 933 WP_038402058.1 recombinase RecT -
  RB99_RS04700 (RB99_04710) - 877405..878259 (-) 855 WP_059116724.1 lambda-exonuclease family protein -
  RB99_RS04705 (RB99_04715) - 878249..878992 (-) 744 WP_048818566.1 phage regulatory protein/antirepressor Ant -
  RB99_RS04710 (RB99_04720) - 878989..879171 (-) 183 WP_002900944.1 hypothetical protein -
  RB99_RS04715 (RB99_04725) - 879316..879531 (+) 216 WP_048818567.1 hypothetical protein -
  RB99_RS09235 - 879501..879665 (-) 165 WP_194717242.1 hypothetical protein -
  RB99_RS04720 (RB99_04730) - 879662..879916 (-) 255 WP_048818568.1 hypothetical protein -
  RB99_RS04725 (RB99_04735) - 879907..880176 (-) 270 WP_048818569.1 hypothetical protein -
  RB99_RS04730 (RB99_04740) - 880726..880998 (-) 273 WP_048818570.1 hypothetical protein -
  RB99_RS04735 (RB99_04745) - 881140..881397 (+) 258 WP_048818571.1 hypothetical protein -
  RB99_RS04740 (RB99_04750) - 881431..882255 (-) 825 WP_048818572.1 hypothetical protein -
  RB99_RS04745 (RB99_04755) CJE0566 882248..882898 (-) 651 WP_048818573.1 DNA/RNA non-specific endonuclease Regulator
  RB99_RS04750 (RB99_04760) - 882895..883245 (-) 351 WP_048818574.1 hypothetical protein -
  RB99_RS04755 (RB99_04765) - 883253..884161 (-) 909 WP_126236744.1 DUF6731 family protein -
  RB99_RS04760 (RB99_04770) - 884170..884901 (-) 732 WP_002865053.1 S24 family peptidase -
  RB99_RS04765 (RB99_04775) - 885046..885261 (+) 216 WP_048818576.1 hypothetical protein -
  RB99_RS08995 - 885357..885656 (+) 300 WP_002861657.1 hypothetical protein -
  RB99_RS04775 (RB99_04785) - 885653..886654 (+) 1002 WP_048818580.1 hypothetical protein -
  RB99_RS04780 (RB99_04790) - 886665..887312 (+) 648 WP_048818581.1 hypothetical protein -
  RB99_RS04785 (RB99_04795) - 887330..887710 (+) 381 WP_048818583.1 crossover junction endodeoxyribonuclease RusA -
  RB99_RS04790 (RB99_04800) - 887710..888096 (+) 387 WP_002861661.1 terminase small subunit -
  RB99_RS04795 (RB99_04805) - 888093..889385 (+) 1293 WP_048818585.1 terminase -
  RB99_RS04800 (RB99_04810) - 889375..889647 (+) 273 WP_002781524.1 hypothetical protein -
  RB99_RS04805 (RB99_04815) - 889628..891166 (+) 1539 WP_048818586.1 hypothetical protein -
  RB99_RS04810 (RB99_04820) - 891159..891362 (+) 204 WP_000931940.1 hypothetical protein -
  RB99_RS04815 (RB99_04825) - 891352..891999 (+) 648 WP_048818588.1 hypothetical protein -
  RB99_RS04820 (RB99_04830) - 892010..892390 (+) 381 WP_002791792.1 hypothetical protein -
  RB99_RS04825 (RB99_04835) - 892650..893843 (+) 1194 WP_048818589.1 hypothetical protein -
  RB99_RS04830 (RB99_04840) - 893843..897478 (+) 3636 WP_048818590.1 hypothetical protein -
  RB99_RS04835 (RB99_04845) - 897580..897789 (-) 210 WP_002846748.1 hypothetical protein -
  RB99_RS04840 (RB99_04850) - 897940..898617 (+) 678 WP_038838150.1 Rha family transcriptional regulator -
  RB99_RS04845 (RB99_04855) - 898695..899729 (+) 1035 WP_002875076.1 DUF5309 family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25475.95 Da        Isoelectric Point: 9.8477

>NTDB_id=138596 RB99_RS04745 WP_048818573.1 882248..882898(-) (CJE0566) [Campylobacter jejuni strain CJ677CC014]
MKKLILLPLLSTLAFADYNQYKPSEDFAKYFTKQNCSQVLDKFYYINCYDYNYKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTISNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVALKLGEIEVL
NLVNYDSNPQRIRNQIAIPSSYTKILKGENFKECYQVPNHEVDNLSIKRYKFNCDG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=138596 RB99_RS04745 WP_048818573.1 882248..882898(-) (CJE0566) [Campylobacter jejuni strain CJ677CC014]
ATGAAAAAACTCATACTTTTACCATTGTTATCCACTCTAGCCTTTGCTGATTATAATCAATACAAACCAAGTGAAGATTT
TGCCAAGTATTTTACTAAGCAAAACTGCTCACAAGTTTTAGATAAATTTTATTATATTAATTGCTATGATTATAATTATA
AAGGCACTAAAGCTGTAGCTTATAAACTAGAAGCAGATAATCTAAAAGGCGAACAAATCAAAAAACGCCCACGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACTACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGCATACTAT
TTCTAATGCTTCCATGAGAAAAACAACCCAAGCTCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AGATCAATCAAAGGGTTTGGAACAAGATTGAAAAAAGAGAAAGACAAGTAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTGGTTAATTATGATAGCAACCCTCAAAGAATAAGAAATCAAATTGCTATTCCAAGCTCTTACACTAAGATTTTAAA
AGGTGAGAATTTTAAAGAATGTTATCAAGTGCCAAATCATGAAGTCGATAATTTAAGTATAAAAAGATATAAGTTTAATT
GCGATGGATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

90.698

99.537

0.903
  CJE1441 Campylobacter jejuni RM1221

89.767

99.537

0.894

Multiple sequence alignment