Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AR446_RS02930 Genome accession   NZ_CP013034
Coordinates   567035..567583 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain HC2-48     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 562035..572583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR446_RS02900 (AR446_02900) ctsT 562078..562383 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  AR446_RS02905 (AR446_02905) proC 562380..563117 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  AR446_RS02910 (AR446_02910) fliW 563117..563506 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  AR446_RS02915 (AR446_02915) - 563670..564317 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  AR446_RS02920 (AR446_02920) lon 564333..566708 (+) 2376 WP_002805015.1 endopeptidase La -
  AR446_RS02925 (AR446_02925) rpsR 566764..567024 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  AR446_RS02930 (AR446_02930) ssb 567035..567583 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  AR446_RS02935 (AR446_02935) rpsF 567592..567969 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  AR446_RS02940 (AR446_02940) - 568248..569518 (+) 1271 Protein_576 MFS transporter -
  AR446_RS02945 (AR446_02945) - 569518..570519 (+) 1002 WP_002805016.1 sugar phosphate isomerase/epimerase family protein -
  AR446_RS02950 (AR446_02950) - 570512..571369 (-) 858 WP_002808542.1 VirK family antimicrobial peptide resistance protein -
  AR446_RS02955 (AR446_02955) rseP 571366..572469 (-) 1104 WP_002805018.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=138593 AR446_RS02930 WP_002777084.1 567035..567583(-) (ssb) [Campylobacter coli strain HC2-48]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=138593 AR446_RS02930 WP_002777084.1 567035..567583(-) (ssb) [Campylobacter coli strain HC2-48]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379