Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   AR446_RS02900 Genome accession   NZ_CP013034
Coordinates   562078..562383 (-) Length   101 a.a.
NCBI ID   WP_002790525.1    Uniprot ID   -
Organism   Campylobacter coli strain HC2-48     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 557078..567383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR446_RS02865 (AR446_02865) - 557493..558254 (+) 762 WP_025431509.1 ATP-binding protein -
  AR446_RS02870 (AR446_02870) - 558251..558934 (+) 684 WP_002780240.1 3-methyladenine DNA glycosylase -
  AR446_RS02875 (AR446_02875) thiD 558934..559746 (+) 813 WP_002786353.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AR446_RS02880 (AR446_02880) thiE 559736..560368 (+) 633 WP_002805014.1 thiamine phosphate synthase -
  AR446_RS02885 (AR446_02885) - 560346..560975 (+) 630 WP_002783358.1 uroporphyrinogen-III synthase -
  AR446_RS02890 (AR446_02890) - 560968..561420 (-) 453 WP_002777117.1 hypothetical protein -
  AR446_RS02895 (AR446_02895) - 561417..562085 (-) 669 WP_002790524.1 hypothetical protein -
  AR446_RS02900 (AR446_02900) ctsT 562078..562383 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  AR446_RS02905 (AR446_02905) proC 562380..563117 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  AR446_RS02910 (AR446_02910) fliW 563117..563506 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  AR446_RS02915 (AR446_02915) - 563670..564317 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  AR446_RS02920 (AR446_02920) lon 564333..566708 (+) 2376 WP_002805015.1 endopeptidase La -
  AR446_RS02925 (AR446_02925) rpsR 566764..567024 (-) 261 WP_002777087.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 12410.27 Da        Isoelectric Point: 6.0617

>NTDB_id=138591 AR446_RS02900 WP_002790525.1 562078..562383(-) (ctsT) [Campylobacter coli strain HC2-48]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE

Nucleotide


Download         Length: 306 bp        

>NTDB_id=138591 AR446_RS02900 WP_002790525.1 562078..562383(-) (ctsT) [Campylobacter coli strain HC2-48]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

48.98

97.03

0.475