Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   RC43_RS02955 Genome accession   NZ_CP010498
Coordinates   538277..538900 (-) Length   207 a.a.
NCBI ID   WP_059116313.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC537     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 533277..543900
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC43_RS02920 (RC43_02925) - 533627..534631 (+) 1005 WP_072225842.1 hypothetical protein -
  RC43_RS02925 (RC43_02930) tlyA 534628..535389 (+) 762 WP_002931934.1 TlyA family RNA methyltransferase -
  RC43_RS02930 (RC43_02935) ribF 535355..536209 (+) 855 WP_002931935.1 bifunctional riboflavin kinase/FAD synthetase -
  RC43_RS02935 (RC43_02940) cmoA 536196..536906 (+) 711 WP_072225838.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  RC43_RS02940 (RC43_02945) - 536896..537117 (-) 222 WP_072225837.1 EexN family lipoprotein -
  RC43_RS02945 (RC43_02950) - 537108..537548 (-) 441 WP_002931936.1 EexN family lipoprotein -
  RC43_RS02950 (RC43_02955) - 537607..538239 (-) 633 WP_002861298.1 trimeric intracellular cation channel family protein -
  RC43_RS02955 (RC43_02960) CJE0566 538277..538900 (-) 624 WP_059116313.1 DNA/RNA non-specific endonuclease Regulator
  RC43_RS02960 (RC43_02965) nth 538897..539523 (-) 627 WP_002931938.1 endonuclease III -
  RC43_RS02965 (RC43_02970) peb4 539604..540425 (+) 822 WP_002931939.1 peptidylprolyl isomerase PEB4 -
  RC43_RS02970 (RC43_02975) fbaA 540425..541489 (+) 1065 WP_002931943.1 class II fructose-bisphosphate aldolase -
  RC43_RS02975 (RC43_02980) - 541584..543026 (+) 1443 WP_002931946.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 24330.97 Da        Isoelectric Point: 9.8599

>NTDB_id=138488 RC43_RS02955 WP_059116313.1 538277..538900(-) (CJE0566) [Campylobacter jejuni strain CJ677CC537]
MKIFIFLLAIFLNIFALESYKPSAVFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKNKQIKKRPRFED
DTNIPKKYRTTWSDYKNSSYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNIIWNEIEQRERNLALKFQSIEVLN
LVLYDKEPQYIKNHIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=138488 RC43_RS02955 WP_059116313.1 538277..538900(-) (CJE0566) [Campylobacter jejuni strain CJ677CC537]
ATGAAAATTTTCATCTTTTTACTCGCTATATTTCTTAATATTTTCGCCTTAGAATCTTACAAGCCTAGTGCTGTTTTTTC
TTCTTATTTTAACAACATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GTACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAAATAAACAAATTAAAAAACGTCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGCAGCTACACGCGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCCCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCGCAAA
TAAATAATATAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTGGCTTTAAAATTTCAAAGTATTGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCATATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCACGAAGTAAATGATGAAAATATTAAATAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(23-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

71.277

90.821

0.647
  CJE1441 Campylobacter jejuni RM1221

70.745

90.821

0.643

Multiple sequence alignment