Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   RC03_RS02630 Genome accession   NZ_CP010496
Coordinates   469560..470210 (-) Length   216 a.a.
NCBI ID   WP_059118350.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC032     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 464560..475210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC03_RS02590 (RC03_02595) - 464679..465611 (-) 933 WP_038402058.1 recombinase RecT -
  RC03_RS02595 (RC03_02600) - 465613..466467 (-) 855 WP_059118349.1 lambda-exonuclease family protein -
  RC03_RS02600 (RC03_02605) - 466469..466696 (-) 228 WP_002874355.1 helix-turn-helix domain-containing protein -
  RC03_RS02605 (RC03_02610) - 466687..466944 (-) 258 WP_002865124.1 hypothetical protein -
  RC03_RS02610 (RC03_02615) - 466935..467204 (-) 270 WP_022552238.1 hypothetical protein -
  RC03_RS02615 (RC03_02620) - 467562..467834 (-) 273 WP_052799618.1 hypothetical protein -
  RC03_RS02620 (RC03_02625) - 467978..468709 (+) 732 WP_002861653.1 hypothetical protein -
  RC03_RS02625 (RC03_02630) - 468743..469570 (-) 828 WP_173405595.1 hypothetical protein -
  RC03_RS02630 (RC03_02635) CJE0566 469560..470210 (-) 651 WP_059118350.1 DNA/RNA non-specific endonuclease Regulator
  RC03_RS02635 (RC03_02640) - 470228..470635 (-) 408 WP_052805326.1 hypothetical protein -
  RC03_RS02640 (RC03_02645) - 470592..471380 (-) 789 WP_059118352.1 hypothetical protein -
  RC03_RS02645 (RC03_02650) - 471368..471745 (-) 378 WP_052805308.1 hypothetical protein -
  RC03_RS02650 (RC03_02655) - 471958..472731 (-) 774 WP_052805309.1 hypothetical protein -
  RC03_RS02655 (RC03_02660) - 472728..473462 (-) 735 WP_011049707.1 S24 family peptidase -
  RC03_RS08955 - 473574..473792 (+) 219 WP_002826741.1 hypothetical protein -
  RC03_RS02660 (RC03_02665) - 473953..474318 (-) 366 WP_002874369.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25371.87 Da        Isoelectric Point: 9.6859

>NTDB_id=138435 RC03_RS02630 WP_059118350.1 469560..470210(-) (CJE0566) [Campylobacter jejuni strain CJ677CC032]
MKKLIILPLLSTLALADYTQYKPSEDFAKYFTKQSCSQVLDKFYYLNCYDYNYKGTKAVAYRLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTISNASMRKTTQAQRSTFLMSNITPQNPQINQKVWNKIEKRERQIALKLGEIEVL
NLVNYDSNPQRIRNQIAIPSSYTKILKGDNFKECYQVPNHEVEVESIKSYKVDCDK

Nucleotide


Download         Length: 651 bp        

>NTDB_id=138435 RC03_RS02630 WP_059118350.1 469560..470210(-) (CJE0566) [Campylobacter jejuni strain CJ677CC032]
ATGAAAAAACTTATAATCTTACCATTGTTATCCACTCTAGCCTTAGCTGATTACACGCAATACAAGCCAAGTGAAGATTT
TGCTAAGTATTTTACTAAGCAAAGTTGCTCACAAGTTTTAGATAAGTTTTATTATCTAAATTGTTATGATTATAATTATA
AAGGCACTAAAGCCGTAGCTTATAGATTAGAAGCGGATAATTTAAAAGGCGAACAAATCAAAAAACGCCCTCGCTTTGAA
GATGATACAAATATACCTAAAAAATACCGCACTACATGGAGTGATTATAAAAACAGCGGTTATGATAGAGGGCATACTAT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCCCAAAGAAGCACTTTTTTAATGAGTAATATTACTCCGCAAAATCCAC
AAATTAATCAAAAAGTATGGAATAAGATTGAAAAAAGAGAAAGACAAATAGCTTTAAAGCTTGGAGAAATTGAAGTTTTA
AATTTGGTTAATTATGATAGCAACCCTCAAAGAATAAGAAATCAAATTGCTATTCCAAGCTCTTACACTAAGATTTTAAA
AGGCGATAATTTTAAAGAATGTTATCAAGTGCCAAATCATGAAGTAGAAGTTGAGAGTATAAAAAGCTATAAGGTTGATT
GTGATAAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

90.741

100

0.907
  CJE1441 Campylobacter jejuni RM1221

90.233

99.537

0.898

Multiple sequence alignment