Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MJ49_RS18665 Genome accession   NZ_CP013025
Coordinates   3577444..3578181 (-) Length   245 a.a.
NCBI ID   WP_000197684.1    Uniprot ID   -
Organism   Escherichia coli strain 2009C-3133     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3572444..3583181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ49_RS18635 (MJ49_17895) tyrA 3572817..3573938 (+) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  MJ49_RS18640 (MJ49_17900) pheA 3573981..3575141 (-) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  MJ49_RS31825 pheL 3575240..3575287 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MJ49_RS18645 (MJ49_17905) raiA 3575391..3575732 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MJ49_RS29480 insG 3575993..3577340 (-) 1348 Protein_3428 IS4-like element IS4 family transposase -
  MJ49_RS18665 (MJ49_17925) comL 3577444..3578181 (-) 738 WP_000197684.1 outer membrane protein assembly factor BamD Machinery gene
  MJ49_RS18670 (MJ49_17930) rluD 3578316..3579296 (+) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MJ49_RS18675 (MJ49_17935) yfiH 3579293..3580024 (+) 732 WP_000040126.1 purine nucleoside phosphorylase YfiH -
  MJ49_RS18680 (MJ49_17940) clpC 3580154..3582727 (+) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27811.36 Da        Isoelectric Point: 6.4874

>NTDB_id=138392 MJ49_RS18665 WP_000197684.1 3577444..3578181(-) (comL) [Escherichia coli strain 2009C-3133]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=138392 MJ49_RS18665 WP_000197684.1 3577444..3578181(-) (comL) [Escherichia coli strain 2009C-3133]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384

Multiple sequence alignment