Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   RC37_RS07315 Genome accession   NZ_CP010492
Coordinates   1391512..1391823 (-) Length   103 a.a.
NCBI ID   WP_002932309.1    Uniprot ID   A0A5T1CZI8
Organism   Campylobacter jejuni strain CJ677CC531     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1386512..1396823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC37_RS07295 (RC37_07285) ctsE 1387381..1388940 (-) 1560 WP_032598692.1 GspE/PulE family protein Machinery gene
  RC37_RS07300 (RC37_07290) ctsX 1388930..1389517 (-) 588 WP_002932306.1 hypothetical protein Machinery gene
  RC37_RS07305 (RC37_07295) ctsP 1389521..1390129 (-) 609 WP_002932308.1 ATP-binding protein Machinery gene
  RC37_RS07310 (RC37_07300) mshL 1390122..1391534 (-) 1413 Protein_1444 pilus (MSHA type) biogenesis protein MshL -
  RC37_RS07315 (RC37_07305) ctsR 1391512..1391823 (-) 312 WP_002932309.1 hypothetical protein Machinery gene
  RC37_RS07320 (RC37_07310) nifJ 1391847..1395407 (-) 3561 WP_002932311.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  RC37_RS07325 (RC37_07315) - 1395500..1396141 (-) 642 WP_002932313.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12431.31 Da        Isoelectric Point: 6.4656

>NTDB_id=138346 RC37_RS07315 WP_002932309.1 1391512..1391823(-) (ctsR) [Campylobacter jejuni strain CJ677CC531]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIILDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=138346 RC37_RS07315 WP_002932309.1 1391512..1391823(-) (ctsR) [Campylobacter jejuni strain CJ677CC531]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATACTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1CZI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment