Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MJ49_RS09310 Genome accession   NZ_CP013025
Coordinates   1697246..1697722 (+) Length   158 a.a.
NCBI ID   WP_020923985.1    Uniprot ID   -
Organism   Escherichia coli strain 2009C-3133     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1692246..1702722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ49_RS09275 (MJ49_08555) - 1692931..1693815 (+) 885 WP_000010397.1 GTPase family protein -
  MJ49_RS09285 (MJ49_08565) - 1694018..1694698 (+) 681 WP_001282919.1 YafY family protein -
  MJ49_RS09290 (MJ49_08570) - 1694846..1695523 (+) 678 WP_001097298.1 hypothetical protein -
  MJ49_RS09295 - 1695529..1695761 (+) 233 Protein_1647 DUF905 family protein -
  MJ49_RS09300 (MJ49_08575) - 1695851..1696669 (+) 819 WP_020923987.1 DUF932 domain-containing protein -
  MJ49_RS09305 (MJ49_08580) - 1696751..1697230 (+) 480 WP_020923986.1 antirestriction protein -
  MJ49_RS09310 (MJ49_08585) radC 1697246..1697722 (+) 477 WP_020923985.1 RadC family protein Machinery gene
  MJ49_RS09315 (MJ49_08590) - 1697785..1698006 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  MJ49_RS09320 (MJ49_08595) - 1698080..1698370 (+) 291 Protein_1652 type IV toxin-antitoxin system YeeU family antitoxin -
  MJ49_RS09325 (MJ49_08600) ltrA 1698461..1699702 (-) 1242 WP_060565034.1 group II intron reverse transcriptase/maturase -
  MJ49_RS31685 - 1701547..1701627 (+) 81 Protein_1655 type IV toxin-antitoxin system YeeU family antitoxin -
  MJ49_RS09345 (MJ49_08620) cbtA 1701717..1702094 (+) 378 WP_060565038.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  MJ49_RS09350 (MJ49_08625) - 1702091..1702579 (+) 489 WP_000761721.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.35 Da        Isoelectric Point: 7.2020

>NTDB_id=138345 MJ49_RS09310 WP_020923985.1 1697246..1697722(+) (radC) [Escherichia coli strain 2009C-3133]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEITPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=138345 MJ49_RS09310 WP_020923985.1 1697246..1697722(+) (radC) [Escherichia coli strain 2009C-3133]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAATCACCCCCAGTAAGGCTGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment