Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   RC00_RS03005 Genome accession   NZ_CP010481
Coordinates   547971..548594 (-) Length   207 a.a.
NCBI ID   WP_002931937.1    Uniprot ID   A0A5T1D259
Organism   Campylobacter jejuni strain CJ677CC016     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 542971..553594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC00_RS02970 (RC00_02980) - 543321..544325 (+) 1005 WP_072225842.1 hypothetical protein -
  RC00_RS02975 (RC00_02985) tlyA 544322..545083 (+) 762 WP_002931934.1 TlyA family RNA methyltransferase -
  RC00_RS02980 (RC00_02990) ribF 545049..545903 (+) 855 WP_002931935.1 bifunctional riboflavin kinase/FAD synthetase -
  RC00_RS02985 (RC00_02995) cmoA 545890..546600 (+) 711 WP_072225838.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  RC00_RS02990 (RC00_03000) - 546590..546811 (-) 222 WP_072225837.1 EexN family lipoprotein -
  RC00_RS02995 (RC00_03005) - 546802..547242 (-) 441 WP_002931936.1 EexN family lipoprotein -
  RC00_RS03000 (RC00_03010) - 547301..547933 (-) 633 WP_002861298.1 trimeric intracellular cation channel family protein -
  RC00_RS03005 (RC00_03015) CJE0566 547971..548594 (-) 624 WP_002931937.1 DNA/RNA non-specific endonuclease Regulator
  RC00_RS03010 (RC00_03020) nth 548591..549217 (-) 627 WP_002931938.1 endonuclease III -
  RC00_RS03015 (RC00_03025) peb4 549298..550119 (+) 822 WP_002931939.1 peptidylprolyl isomerase PEB4 -
  RC00_RS03020 (RC00_03030) fbaA 550119..551183 (+) 1065 WP_002931943.1 class II fructose-bisphosphate aldolase -
  RC00_RS03025 (RC00_03035) - 551278..552720 (+) 1443 WP_002931946.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 24300.94 Da        Isoelectric Point: 9.8599

>NTDB_id=138040 RC00_RS03005 WP_002931937.1 547971..548594(-) (CJE0566) [Campylobacter jejuni strain CJ677CC016]
MKIFIFLLAIFLNIFALESYKPSAVFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKNKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNIIWNEIEQRERNLALKFQSIEVLN
LVLYDKEPQYIKNHIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIK

Nucleotide


Download         Length: 624 bp        

>NTDB_id=138040 RC00_RS03005 WP_002931937.1 547971..548594(-) (CJE0566) [Campylobacter jejuni strain CJ677CC016]
ATGAAAATTTTCATCTTTTTACTCGCTATATTTCTTAATATTTTCGCCTTAGAATCTTACAAGCCTAGTGCTGTTTTTTC
TTCTTATTTTAACAACATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GTACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAAATAAACAAATTAAAAAACGTCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGCGGCTACACGCGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCCCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCGCAAA
TAAATAATATAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTGGCTTTAAAATTTCAAAGTATTGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCATATTGCTATACCAAGTTTTTATGTAAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGTACCAAACCACGAAGTAAATGATGAAAATATTAAATAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(23-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T1D259

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

71.809

90.821

0.652
  CJE1441 Campylobacter jejuni RM1221

71.277

90.821

0.647

Multiple sequence alignment