Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | RC40_RS04890 | Genome accession | NZ_CP010473 |
| Coordinates | 921255..921557 (+) | Length | 100 a.a. |
| NCBI ID | WP_002932767.1 | Uniprot ID | A0A5T1CZF9 |
| Organism | Campylobacter jejuni strain CJ677CC534 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 916255..926557
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RC40_RS04865 (RC40_04860) | rpsR | 916617..916877 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| RC40_RS04870 (RC40_04865) | lon | 916938..919313 (-) | 2376 | WP_002866098.1 | endopeptidase La | - |
| RC40_RS04875 (RC40_04870) | - | 919330..919977 (-) | 648 | WP_002877748.1 | outer membrane protein assembly factor BamD | - |
| RC40_RS04880 (RC40_04875) | fliW | 920138..920527 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| RC40_RS04885 (RC40_04880) | proC | 920527..921258 (+) | 732 | WP_002932769.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| RC40_RS04890 (RC40_04885) | ctsT | 921255..921557 (+) | 303 | WP_002932767.1 | transformation system protein | Machinery gene |
| RC40_RS04895 (RC40_04890) | - | 921554..922216 (+) | 663 | WP_002866103.1 | hypothetical protein | - |
| RC40_RS04900 (RC40_04895) | - | 922213..922665 (+) | 453 | WP_002869049.1 | hypothetical protein | - |
| RC40_RS04905 (RC40_04900) | hemD | 922662..923291 (-) | 630 | WP_002932761.1 | uroporphyrinogen-III synthase | - |
| RC40_RS04910 (RC40_04905) | thiE | 923269..923901 (-) | 633 | WP_002932757.1 | thiamine phosphate synthase | - |
| RC40_RS04915 (RC40_04910) | thiD | 923891..924703 (-) | 813 | WP_002869047.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| RC40_RS04920 (RC40_04915) | - | 924700..925386 (-) | 687 | WP_002932755.1 | 3-methyladenine DNA glycosylase | - |
| RC40_RS04925 (RC40_04920) | - | 925383..926144 (-) | 762 | WP_002932753.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12120.19 Da Isoelectric Point: 6.2957
>NTDB_id=137859 RC40_RS04890 WP_002932767.1 921255..921557(+) (ctsT) [Campylobacter jejuni strain CJ677CC534]
MKKAFILIESISAITIISLIFIGIFYYYAQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYYYAQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=137859 RC40_RS04890 WP_002932767.1 921255..921557(+) (ctsT) [Campylobacter jejuni strain CJ677CC534]
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATGCTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGTATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATGCTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCCATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
99 |
100 |
0.99 |