Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   QY02_RS02560 Genome accession   NZ_CP010472
Coordinates   449918..450580 (-) Length   220 a.a.
NCBI ID   WP_052798611.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC002     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 436920..467036 449918..450580 within 0


Gene organization within MGE regions


Location: 436920..467036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY02_RS02440 (QY02_02445) - 436920..438122 (+) 1203 WP_052844203.1 site-specific integrase -
  QY02_RS02445 (QY02_02450) - 438119..438289 (-) 171 WP_002864902.1 helix-turn-helix domain-containing protein -
  QY02_RS02450 (QY02_02455) - 438282..438824 (-) 543 WP_059111110.1 pentapeptide repeat-containing protein -
  QY02_RS02455 (QY02_02460) - 438812..439012 (-) 201 WP_059111111.1 hypothetical protein -
  QY02_RS02460 (QY02_02465) - 439053..439472 (-) 420 WP_059111112.1 YopX family protein -
  QY02_RS02465 (QY02_02470) - 439476..440174 (-) 699 WP_059111113.1 antA/AntB antirepressor family protein -
  QY02_RS02470 (QY02_02475) - 440348..440743 (-) 396 WP_059111114.1 hypothetical protein -
  QY02_RS02475 (QY02_02480) - 440756..441028 (-) 273 WP_059111115.1 hypothetical protein -
  QY02_RS02480 (QY02_02485) - 441021..441344 (-) 324 WP_059111116.1 hypothetical protein -
  QY02_RS02485 (QY02_02490) - 441408..442307 (-) 900 WP_171831519.1 hypothetical protein -
  QY02_RS02490 (QY02_02495) - 442341..443093 (-) 753 WP_059111117.1 site-specific DNA-methyltransferase -
  QY02_RS02495 (QY02_02500) - 443095..443352 (-) 258 WP_059111150.1 hypothetical protein -
  QY02_RS02500 (QY02_02505) - 443333..444031 (-) 699 WP_059111118.1 hypothetical protein -
  QY02_RS02505 (QY02_02510) - 444031..444765 (-) 735 WP_059111119.1 hypothetical protein -
  QY02_RS02510 (QY02_02515) - 444767..445621 (-) 855 WP_048818565.1 lambda-exonuclease family protein -
  QY02_RS02515 (QY02_02520) - 445611..446354 (-) 744 WP_048818566.1 phage regulatory protein/antirepressor Ant -
  QY02_RS02520 (QY02_02525) - 446351..446533 (-) 183 WP_002900944.1 hypothetical protein -
  QY02_RS02525 (QY02_02530) - 446678..446893 (+) 216 WP_048818567.1 hypothetical protein -
  QY02_RS09190 - 446863..447027 (-) 165 WP_194717242.1 hypothetical protein -
  QY02_RS02530 (QY02_02535) - 447024..447278 (-) 255 WP_048818568.1 hypothetical protein -
  QY02_RS02535 (QY02_02540) - 447269..447538 (-) 270 WP_002783984.1 hypothetical protein -
  QY02_RS02540 (QY02_02545) - 447895..448167 (-) 273 WP_059111120.1 hypothetical protein -
  QY02_RS02545 (QY02_02550) - 448311..449042 (+) 732 WP_002861653.1 hypothetical protein -
  QY02_RS02550 (QY02_02555) - 449087..449362 (-) 276 WP_002840259.1 hypothetical protein -
  QY02_RS02555 (QY02_02560) - 449349..449852 (-) 504 WP_002840261.1 Panacea domain-containing protein -
  QY02_RS02560 (QY02_02565) CJE0566 449918..450580 (-) 663 WP_052798611.1 DNA/RNA non-specific endonuclease Regulator
  QY02_RS02565 (QY02_02570) - 450577..451011 (-) 435 WP_044778799.1 protein-export chaperone SecB -
  QY02_RS02570 (QY02_02575) - 451027..451719 (-) 693 WP_059115193.1 hypothetical protein -
  QY02_RS02575 (QY02_02580) - 451724..452083 (-) 360 WP_126212332.1 hypothetical protein -
  QY02_RS02580 (QY02_02585) - 452092..452826 (-) 735 WP_052798610.1 S24 family peptidase -
  QY02_RS08950 - 452938..453156 (+) 219 WP_002826741.1 hypothetical protein -
  QY02_RS02585 (QY02_02590) - 453317..453682 (-) 366 WP_002874369.1 hypothetical protein -
  QY02_RS02590 (QY02_02595) - 453725..454726 (+) 1002 WP_059115194.1 hypothetical protein -
  QY02_RS02595 (QY02_02600) - 454737..455387 (+) 651 WP_002861659.1 hypothetical protein -
  QY02_RS02600 (QY02_02605) - 455405..455785 (+) 381 WP_002861660.1 hypothetical protein -
  QY02_RS02605 (QY02_02610) - 455785..456171 (+) 387 WP_002826748.1 terminase small subunit -
  QY02_RS02610 (QY02_02615) - 456168..457460 (+) 1293 WP_059111124.1 terminase -
  QY02_RS02615 (QY02_02620) - 457450..457722 (+) 273 WP_057031814.1 hypothetical protein -
  QY02_RS02620 (QY02_02625) - 457703..459241 (+) 1539 WP_002875071.1 hypothetical protein -
  QY02_RS02625 (QY02_02630) - 459234..459437 (+) 204 WP_002875072.1 hypothetical protein -
  QY02_RS02630 (QY02_02635) - 459427..460074 (+) 648 WP_059111125.1 hypothetical protein -
  QY02_RS02635 (QY02_02640) - 460085..460465 (+) 381 WP_059111126.1 hypothetical protein -
  QY02_RS02640 (QY02_02645) - 460730..461944 (+) 1215 WP_059111127.1 hypothetical protein -
  QY02_RS09195 (QY02_02650) - 461941..465621 (+) 3681 WP_059111128.1 PBECR2 nuclease fold domain-containing protein -
  QY02_RS02650 (QY02_02655) - 466002..467036 (+) 1035 WP_002875076.1 DUF5309 family protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25719.20 Da        Isoelectric Point: 9.7988

>NTDB_id=137828 QY02_RS02560 WP_052798611.1 449918..450580(-) (CJE0566) [Campylobacter jejuni strain CJ677CC002]
MKKLILLPLLSTLAFADYTQYKPSEDFAKYLTKQNCSQVLDKFYYLNCYDYNLKGTKAVAYKLEADNLKGEQIKKRPRFE
DDTNIPKKYRTTWSDYKNSGYDRGHTLSNASMRKTTQAQRSTFLMSNITPQNPQINQRVWNKIEKRERQVASKLGSLEVL
NLVNYDNNPQRIRNQIAIPSSYTKILKGENFKECYQVPNHEVENENIKNYKVNCDILTGS

Nucleotide


Download         Length: 663 bp        

>NTDB_id=137828 QY02_RS02560 WP_052798611.1 449918..450580(-) (CJE0566) [Campylobacter jejuni strain CJ677CC002]
ATGAAAAAACTCATACTTTTACCATTGTTATCCACTCTAGCCTTTGCTGATTATACACAATACAAGCCAAGCGAAGATTT
TGCTAAGTATTTGACTAAGCAAAACTGCTCACAAGTTTTAGATAAGTTTTATTATCTAAATTGTTATGATTATAATCTTA
AAGGCACTAAAGCTGTAGCTTATAAACTAGAAGCAGATAATCTAAAAGGTGAACAAATCAAAAAACGCCCTCGCTTTGAA
GATGATACAAATATTCCTAAAAAATATCGCACCACTTGGAGTGATTATAAAAATAGTGGTTATGATAGAGGACACACTCT
TTCTAATGCTTCAATGAGAAAAACAACTCAAGCTCAAAGAAGCACATTCTTAATGAGTAATATTACTCCACAAAATCCAC
AAATCAATCAAAGGGTTTGGAACAAGATTGAAAAAAGAGAAAGACAAGTAGCTTCAAAGCTTGGAAGTTTAGAAGTTTTA
AATTTGGTTAATTATGATAATAATCCACAAAGAATAAGAAATCAAATTGCCATTCCAAGCTCTTACACTAAGATTTTAAA
AGGCGAGAATTTTAAAGAATGTTACCAAGTACCAAATCATGAAGTAGAAAATGAGAATATAAAAAATTATAAGGTTAATT
GTGATATTTTAACCGGCAGTTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(27-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

95.349

97.727

0.932
  CJE1441 Campylobacter jejuni RM1221

93.023

97.727

0.909

Multiple sequence alignment