Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACT75_RS09555 Genome accession   NZ_CP012959
Coordinates   1943499..1944242 (+) Length   247 a.a.
NCBI ID   WP_005549806.1    Uniprot ID   A0A5D0EJL7
Organism   Aggregatibacter actinomycetemcomitans strain 624     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1938499..1949242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACT75_RS09515 (ACT75_09505) tolR 1938902..1939324 (+) 423 WP_005542289.1 colicin uptake protein TolR -
  ACT75_RS09520 (ACT75_09510) tolA 1939341..1940489 (+) 1149 WP_005549166.1 cell envelope integrity protein TolA -
  ACT75_RS09525 (ACT75_09515) tolB 1940524..1941804 (+) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  ACT75_RS09530 (ACT75_09520) pal 1941819..1942286 (+) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  ACT75_RS09550 (ACT75_09540) comN 1942991..1943512 (+) 522 WP_005562086.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACT75_RS09555 (ACT75_09545) comO 1943499..1944242 (+) 744 WP_005549806.1 PulJ/GspJ family protein Machinery gene
  ACT75_RS09560 (ACT75_09550) comP 1944239..1944934 (+) 696 WP_005537951.1 DUF2572 family protein Machinery gene
  ACT75_RS09565 (ACT75_09555) comQ 1944909..1945211 (+) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  ACT75_RS09570 (ACT75_09560) recC 1945257..1948646 (+) 3390 WP_005537947.1 exodeoxyribonuclease V subunit gamma -
  ACT75_RS09575 (ACT75_09565) rimI 1948648..1949091 (-) 444 WP_005537944.1 ribosomal protein S18-alanine N-acetyltransferase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28579.58 Da        Isoelectric Point: 7.9878

>NTDB_id=137762 ACT75_RS09555 WP_005549806.1 1943499..1944242(+) (comO) [Aggregatibacter actinomycetemcomitans strain 624]
MMKNRAFFHVSPYHGQSLVALMISVALSSFLFLVIMQFYSQHQQQNREMLLRLQLQMELQRVIQLMGKDLARSGFRAVNN
KLKQNNIALFEQENTPSAVTIAQVNGEKNNSCVLFFYDLDANGCIGGNYKGDACVVNGRNNTREIERELFGYRLHQNMLE
TRLTYKNAVKQNCSQDECRRYTQQSACHHGGWADLLDEKEYEISQLSFDWLSEQKGIEIRLSGRFKHHKQIEYETSMIVP
LLNGAKE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=137762 ACT75_RS09555 WP_005549806.1 1943499..1944242(+) (comO) [Aggregatibacter actinomycetemcomitans strain 624]
ATGATGAAGAATAGAGCGTTTTTCCACGTGTCGCCTTATCACGGGCAAAGCCTTGTTGCGCTGATGATTTCCGTGGCGCT
TTCGAGCTTTTTATTTCTCGTCATCATGCAGTTTTATAGCCAACATCAGCAACAAAATCGGGAAATGTTACTGCGTTTGC
AGTTACAAATGGAATTACAACGCGTCATTCAATTAATGGGGAAAGATTTGGCAAGAAGTGGTTTTCGTGCCGTAAATAAT
AAATTAAAACAAAATAATATCGCCTTATTCGAGCAAGAAAATACACCATCGGCAGTGACCATCGCGCAAGTGAATGGTGA
GAAAAATAACAGCTGCGTGTTGTTCTTTTATGACTTGGATGCCAATGGGTGTATCGGCGGAAATTATAAAGGCGATGCTT
GTGTTGTGAACGGGCGTAACAATACAAGAGAAATTGAGCGCGAATTATTCGGTTATCGACTTCATCAAAATATGCTGGAA
ACGCGTTTGACTTACAAAAATGCGGTGAAGCAAAACTGCTCCCAAGACGAGTGCCGCCGCTATACACAACAATCCGCGTG
TCATCACGGTGGTTGGGCAGATTTACTGGACGAGAAAGAATATGAAATTTCGCAGTTGAGTTTTGATTGGCTATCGGAAC
AAAAGGGGATTGAAATTCGCCTCAGTGGACGTTTTAAACACCATAAACAGATCGAATATGAAACTTCCATGATCGTGCCT
TTATTGAACGGAGCCAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D0EJL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

51.442

84.211

0.433

Multiple sequence alignment