Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   ACT75_RS09560 Genome accession   NZ_CP012959
Coordinates   1944239..1944934 (+) Length   231 a.a.
NCBI ID   WP_005537951.1    Uniprot ID   A0A142G258
Organism   Aggregatibacter actinomycetemcomitans strain 624     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1939239..1949934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACT75_RS09520 (ACT75_09510) tolA 1939341..1940489 (+) 1149 WP_005549166.1 cell envelope integrity protein TolA -
  ACT75_RS09525 (ACT75_09515) tolB 1940524..1941804 (+) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  ACT75_RS09530 (ACT75_09520) pal 1941819..1942286 (+) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  ACT75_RS09550 (ACT75_09540) comN 1942991..1943512 (+) 522 WP_005562086.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACT75_RS09555 (ACT75_09545) comO 1943499..1944242 (+) 744 WP_005549806.1 PulJ/GspJ family protein Machinery gene
  ACT75_RS09560 (ACT75_09550) comP 1944239..1944934 (+) 696 WP_005537951.1 DUF2572 family protein Machinery gene
  ACT75_RS09565 (ACT75_09555) comQ 1944909..1945211 (+) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene
  ACT75_RS09570 (ACT75_09560) recC 1945257..1948646 (+) 3390 WP_005537947.1 exodeoxyribonuclease V subunit gamma -
  ACT75_RS09575 (ACT75_09565) rimI 1948648..1949091 (-) 444 WP_005537944.1 ribosomal protein S18-alanine N-acetyltransferase -
  ACT75_RS09580 (ACT75_09570) - 1949101..1949538 (-) 438 WP_005549811.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26424.34 Da        Isoelectric Point: 8.4674

>NTDB_id=137763 ACT75_RS09560 WP_005537951.1 1944239..1944934(+) (comP) [Aggregatibacter actinomycetemcomitans strain 624]
MKRLHRGMMTMSLLLLLSAFLLLTMLFNDDLLRLYSSIVGQRNLYVTQQVKLLSLSQSTQRERCEQVPIDENGDVFLVSF
ALEETSFPEGIRHHIWCQRDKLFQKSPVRNLHEGLFAQFIAESGLTIFREQLSGAPKNPVRKQPPSLYWFSADETEWTLD
KNVNAVIVAEGDLQIRGQGKISGSVITKGRLTLDAGIKVTYSKSTVAHIVQQYSRWRLAENSWYDFAVTEN

Nucleotide


Download         Length: 696 bp        

>NTDB_id=137763 ACT75_RS09560 WP_005537951.1 1944239..1944934(+) (comP) [Aggregatibacter actinomycetemcomitans strain 624]
ATGAAACGGCTTCACCGCGGTATGATGACGATGAGTTTGTTATTGTTGCTCAGCGCGTTTTTGCTGTTAACCATGCTATT
TAATGATGATTTATTGCGTCTGTATTCCTCTATTGTGGGGCAGCGAAATCTCTATGTTACACAACAGGTTAAATTATTGT
CATTAAGTCAATCCACACAACGGGAACGATGTGAACAGGTGCCGATCGATGAAAACGGCGATGTGTTTTTAGTGTCGTTT
GCTTTGGAGGAAACGTCATTCCCCGAGGGGATTCGACATCATATTTGGTGCCAACGTGATAAATTATTTCAAAAATCGCC
GGTGAGAAATTTGCATGAAGGCTTATTTGCGCAATTTATTGCTGAAAGCGGGCTGACGATTTTTCGTGAACAACTCTCCG
GAGCGCCTAAGAATCCCGTAAGGAAGCAACCACCTTCCTTATATTGGTTTAGCGCCGACGAAACGGAATGGACGCTTGAT
AAGAATGTGAATGCGGTGATTGTGGCGGAAGGCGATTTGCAGATTCGTGGGCAAGGCAAAATCAGCGGGAGTGTTATCAC
GAAAGGGCGATTAACTTTGGATGCAGGCATTAAAGTCACTTATTCCAAAAGCACCGTTGCGCACATCGTGCAACAGTACA
GCCGATGGCGTTTGGCGGAGAACAGTTGGTATGATTTTGCGGTTACGGAAAATTGA

Domains

Predicted by InterProScan.

Protein of unknown function (DUF2572) (DUF2572)

(6-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142G258

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

39.535

93.074

0.368

Multiple sequence alignment