Detailed information NTG0137729

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: ACT75_RS05415
• Genome accession: NZ_CP012959
• Coordinates: 1127131..1127790 (-)
• Length: 219 a.a.
• NCBI ID: WP_005549324.1
• Uniprot ID: A0A5D0ENL5
• Organism: Aggregatibacter actinomycetemcomitans strain 624
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1122131..1132790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACT75_RS05380 (ACT75_05375)	rpmE	1122574..1122786 (+)	213	WP_005542845.1	50S ribosomal protein L31	-
ACT75_RS05385 (ACT75_05380)	-	1122849..1123541 (+)	693	WP_005542843.1	glycosyltransferase family 25 protein	-
ACT75_RS05390 (ACT75_05385)	-	1123542..1124564 (+)	1023	WP_005542841.1	glycosyltransferase family 9 protein	-
ACT75_RS05395 (ACT75_05390)	-	1124574..1125626 (+)	1053	WP_005542839.1	glycosyltransferase family 9 protein	-
ACT75_RS05400 (ACT75_05395)	mutM	1125629..1126444 (-)	816	WP_005554465.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
ACT75_RS05405 (ACT75_05400)	rpmG	1126526..1126696 (-)	171	WP_005542835.1	50S ribosomal protein L33	-
ACT75_RS05410 (ACT75_05405)	rpmB	1126708..1126944 (-)	237	WP_005542826.1	50S ribosomal protein L28	-
ACT75_RS05415 (ACT75_05410)	radC	1127131..1127790 (-)	660	WP_005549324.1	RadC family protein	Machinery gene
ACT75_RS05420 (ACT75_05415)	coaBC	1127968..1129167 (+)	1200	WP_005540229.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
ACT75_RS05425 (ACT75_05420)	dut	1129236..1129691 (+)	456	WP_005540230.1	dUTP diphosphatase	-
ACT75_RS05430 (ACT75_05425)	slmA	1129691..1130290 (+)	600	WP_005540234.1	nucleoid occlusion factor SlmA	-
ACT75_RS05435 (ACT75_05430)	-	1130314..1130532 (+)	219	WP_005540236.1	YheU family protein	-
ACT75_RS05440 (ACT75_05435)	crp	1130594..1131214 (+)	621	WP_196755642.1	cAMP-activated global transcriptional regulator CRP	Regulator
ACT75_RS05445 (ACT75_05440)	gorA	1131347..1132717 (-)	1371	WP_005540240.1	glutathione-disulfide reductase	-

Sequence

Protein

• Length: 219 a.a.
• Molecular weight: 24858.97 Da
• Isoelectric Point: 7.0207

>NTDB_id=137729 ACT75_RS05415 WP_005549324.1 1127131..1127790(-) (radC) [Aggregatibacter actinomycetemcomitans strain 624]
MNEALMPREKLLKYGAAALTDDELLAIFLRTGIKDCPVMQLSKNVLQHFGSLRELISANQKQFCAVKGIGITQFIQLQAC
TEMTRRYLFAELKETHCFTSPDIVKMYLQTELANTEREIFMVLFLDNQHRLIKQERLFLGTINKAMVYPREIIKEALACN
AAAIILAHNHPSGVAEPSISDKQITDTIRQAADLVDIRVLDHFVIGNGRYFSFAEQNLL

Nucleotide

• Length: 660 bp

>NTDB_id=137729 ACT75_RS05415 WP_005549324.1 1127131..1127790(-) (radC) [Aggregatibacter actinomycetemcomitans strain 624]
ATGAATGAAGCATTAATGCCAAGGGAAAAGCTATTAAAATACGGTGCTGCCGCTTTGACGGACGATGAACTATTGGCGAT
CTTTTTGCGTACGGGAATTAAGGACTGCCCGGTGATGCAGTTATCGAAAAATGTGCTACAACATTTCGGTTCGTTACGTG
AATTGATTAGCGCCAATCAAAAGCAGTTTTGCGCCGTGAAAGGCATTGGTATTACGCAATTTATTCAGCTGCAAGCTTGC
ACCGAAATGACCCGCCGTTATTTGTTTGCAGAATTAAAAGAGACCCACTGTTTTACCTCTCCCGACATTGTGAAAATGTA
TTTGCAGACGGAACTGGCAAATACCGAGCGGGAAATTTTTATGGTGCTTTTTCTGGATAATCAACATCGTTTGATTAAGC
AGGAACGCCTGTTTCTCGGCACAATTAATAAAGCGATGGTGTATCCGCGTGAAATCATTAAAGAAGCCTTGGCTTGTAAT
GCGGCGGCGATTATTTTGGCGCATAATCACCCTTCCGGCGTGGCGGAGCCGAGCATTTCCGATAAACAAATTACCGATAC
TATCAGACAGGCGGCGGATTTGGTGGATATTCGCGTGCTGGATCATTTCGTGATCGGCAATGGACGTTATTTTTCCTTTG
CGGAACAAAATCTTCTTTAA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (3-72)

• RadC-like JAB domain (RadC) (98-217)

3D structure

• AlphaFold DB: A0A5D0ENL5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	67.89	99.543	0.676