Detailed information NTG0137703

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: ACT74_RS08685
• Genome accession: NZ_CP012958
• Coordinates: 1806558..1807217 (+)
• Length: 219 a.a.
• NCBI ID: WP_005544952.1
• Uniprot ID: -
• Organism: Aggregatibacter actinomycetemcomitans strain VT1169
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1801558..1812217

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACT74_RS08655 (ACT74_08655)	gorA	1801631..1803001 (+)	1371	WP_005544964.1	glutathione-disulfide reductase	-
ACT74_RS08660 (ACT74_08660)	crp	1803134..1803778 (-)	645	WP_005544961.1	cAMP-activated global transcriptional regulator CRP	Regulator
ACT74_RS08665 (ACT74_08665)	-	1803816..1804034 (-)	219	WP_005540236.1	YheU family protein	-
ACT74_RS08670 (ACT74_08670)	slmA	1804058..1804657 (-)	600	WP_005540234.1	nucleoid occlusion factor SlmA	-
ACT74_RS08675 (ACT74_08675)	dut	1804657..1805112 (-)	456	WP_005569502.1	dUTP diphosphatase	-
ACT74_RS08680 (ACT74_08680)	coaBC	1805181..1806380 (-)	1200	WP_005566808.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
ACT74_RS08685 (ACT74_08685)	radC	1806558..1807217 (+)	660	WP_005544952.1	RadC family protein	Machinery gene
ACT74_RS08690 (ACT74_08690)	rpmB	1807426..1807662 (+)	237	WP_005542826.1	50S ribosomal protein L28	-
ACT74_RS08695 (ACT74_08695)	rpmG	1807674..1807844 (+)	171	WP_005544948.1	50S ribosomal protein L33	-
ACT74_RS08700 (ACT74_08700)	mutM	1807926..1808741 (+)	816	WP_005544946.1	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	-
ACT74_RS08705 (ACT74_08705)	-	1808744..1809796 (-)	1053	WP_050846296.1	glycosyltransferase family 9 protein	-
ACT74_RS08710 (ACT74_08710)	-	1809806..1810828 (-)	1023	WP_005566800.1	glycosyltransferase family 9 protein	-
ACT74_RS08715 (ACT74_08715)	-	1810829..1811521 (-)	693	WP_005542843.1	glycosyltransferase family 25 protein	-
ACT74_RS08720 (ACT74_08720)	rpmE	1811584..1811796 (-)	213	WP_005542845.1	50S ribosomal protein L31	-

Sequence

Protein

• Length: 219 a.a.
• Molecular weight: 24931.08 Da
• Isoelectric Point: 7.0210

>NTDB_id=137703 ACT74_RS08685 WP_005544952.1 1806558..1807217(+) (radC) [Aggregatibacter actinomycetemcomitans strain VT1169]
MNEALMPREKLLKYGAAALTDDELLAIFLRTGIKDCPVMQLSKNVLQHFGSLRELIRADQKQFCAVKGIGVTQFIQLQAC
TEMTRRYLFAELKETHCFTSTDIVKMYLQTELANIEREIFMVLFLDNQHRLIKQERLFLGTINKAMVYPREIIKEALACN
AAAIILAHNHPSGVAEPSISDKQITDTIRQAADLVDIRVLDHFVIGNGRYFSFAEQNLL

Nucleotide

• Length: 660 bp

>NTDB_id=137703 ACT74_RS08685 WP_005544952.1 1806558..1807217(+) (radC) [Aggregatibacter actinomycetemcomitans strain VT1169]
ATGAATGAAGCATTAATGCCAAGGGAAAAGCTATTAAAATACGGTGCTGCCGCTTTGACGGACGATGAACTATTGGCGAT
CTTTTTGCGTACGGGAATTAAGGACTGCCCGGTGATGCAGTTATCGAAAAATGTATTGCAACATTTTGGTTCTTTACGCG
AGTTAATTCGTGCCGACCAAAAGCAGTTTTGCGCTGTGAAAGGCATTGGCGTTACGCAGTTTATTCAGCTGCAAGCCTGT
ACTGAAATGACCCGCCGTTATTTGTTTGCAGAATTAAAAGAGACCCACTGTTTTACTTCAACCGACATTGTGAAAATGTA
CTTACAGACGGAGCTGGCAAATATCGAGCGGGAAATTTTTATGGTGCTTTTTCTGGATAACCAACATCGCCTGATTAAGC
AGGAACGCCTGTTTCTCGGCACCATTAATAAAGCGATGGTGTACCCGCGTGAAATCATTAAAGAAGCCTTGGCTTGTAAT
GCGGCGGCGATTATTTTGGCGCATAATCACCCTTCCGGCGTGGCGGAACCGAGCATTTCCGATAAACAAATTACCGACAC
CATCAGACAGGCGGCGGATTTGGTGGATATTCGCGTGCTGGATCATTTCGTGATCGGCAATGGACGTTATTTTTCCTTTG
CGGAACAAAATCTTCTTTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (99-217)

• UPF0758 N-terminal (UPF0758_N) (3-73)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	66.972	99.543	0.667