Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   FORC23_RS12520 Genome accession   NZ_CP012950
Coordinates   2699849..2700577 (+) Length   242 a.a.
NCBI ID   WP_005460312.1    Uniprot ID   Q87S66
Organism   Vibrio parahaemolyticus strain FORC_023 isolate 378     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2694849..2705577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC23_RS12505 (FORC23_2327) clpC 2695284..2697857 (-) 2574 WP_005460310.1 ATP-dependent chaperone ClpB Regulator
  FORC23_RS12510 (FORC23_2328) pgeF 2698005..2698733 (-) 729 WP_025518860.1 peptidoglycan editing factor PgeF -
  FORC23_RS12515 (FORC23_2329) rluD 2698735..2699712 (-) 978 WP_070225966.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  FORC23_RS12520 (FORC23_2330) comL 2699849..2700577 (+) 729 WP_005460312.1 outer membrane protein assembly factor BamD Machinery gene
  FORC23_RS12525 (FORC23_2331) - 2700712..2702193 (+) 1482 WP_025576594.1 lytic transglycosylase F -
  FORC23_RS12530 (FORC23_2332) hpf 2702524..2702850 (+) 327 WP_005468590.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  FORC23_RS12535 (FORC23_2333) pheA 2703094..2704272 (+) 1179 WP_005468591.1 prephenate dehydratase -
  FORC23_RS12540 (FORC23_2334) yjjX 2704297..2704830 (+) 534 WP_021450232.1 inosine/xanthosine triphosphatase -
  FORC23_RS12545 (FORC23_2335) trpR 2704879..2705190 (-) 312 WP_005497218.1 trp operon repressor -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27848.79 Da        Isoelectric Point: 5.8151

>NTDB_id=137528 FORC23_RS12520 WP_005460312.1 2699849..2700577(+) (comL) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
MKRQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQVSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFSIDRSDRDPEPVKKAFDDFKKLLQRYPNSPYAED
AQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKSFPDTEAARKSLEIQLEAYKQLQLEDAVARTEALIKLNP
VK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=137528 FORC23_RS12520 WP_005460312.1 2699849..2700577(+) (comL) [Vibrio parahaemolyticus strain FORC_023 isolate 378]
ATGAAACGTCAGACTTTAACAGGCCTTTTAGCGGTATCTCTTCTGTTTGGATGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCGGAACTGTATGCAGACGCACAAGTCTCACTTCAAAGTGGCAACTGGCTTTCTGCGATTGAGAAACTGG
AAGCGTTAGACTCACGTTACCCATTTGGTGCCTACTCTGAACAGGTGCAACTTGACCTTATTTACGCATACTACAAAAAC
GACGACCTAGCGTTAGGCTTAGCAACCATCTCTCGCTTTATGCGCCTAAACCCGACTCATGAAAAAATGGACTGGGTACT
TTACATGCGTGGCCTGAGCCACATGGCTCAAGATCGTAACTTTATGCACGACCTGTTTAGCATCGATCGTAGCGACCGCG
ACCCAGAGCCCGTGAAAAAAGCATTTGATGACTTTAAGAAGCTGCTTCAACGTTATCCAAACAGCCCATATGCGGAAGAT
GCACAAAAACGCATGGTGGCCTTGAAAAACCGCTTGGCGAATTACGATTTAGCTACCGCTGATTTTTACCTTCGCCGTGA
AGCATGGATCGCTGCCATTAACCGTAGCCAAGAGCTTCAAAAATCATTCCCTGATACAGAAGCAGCTCGCAAATCGTTAG
AAATTCAGCTGGAAGCCTACAAGCAGCTGCAACTAGAAGATGCCGTTGCAAGAACAGAAGCGCTCATTAAGCTAAATCCT
GTCAAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87S66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

41.25

99.174

0.409
  comL Neisseria gonorrhoeae MS11

40.833

99.174

0.405

Multiple sequence alignment