Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   APQ97_RS09965 Genome accession   NZ_CP012911
Coordinates   1983460..1984173 (-) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A0H3MT72
Organism   Streptococcus suis strain NSUI060     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1978460..1989173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS09940 (APQ97_09935) - 1978848..1979111 (-) 264 WP_022540536.1 hypothetical protein -
  APQ97_RS09945 (APQ97_09940) - 1979104..1979496 (-) 393 WP_014636774.1 DUF1310 family protein -
  APQ97_RS09950 (APQ97_09945) mutS/mutS2 1979662..1981995 (-) 2334 WP_002935942.1 endonuclease MutS2 Machinery gene
  APQ97_RS09955 (APQ97_09950) - 1982546..1983094 (-) 549 WP_002935945.1 CvpA family protein -
  APQ97_RS09960 (APQ97_09955) - 1983091..1983402 (-) 312 WP_002935948.1 hypothetical protein -
  APQ97_RS09965 (APQ97_09960) treR 1983460..1984173 (-) 714 WP_012774930.1 trehalose operon repressor Regulator
  APQ97_RS09970 (APQ97_09965) treP 1984406..1986400 (+) 1995 WP_053866399.1 PTS system trehalose-specific EIIBC component -
  APQ97_RS09975 (APQ97_09970) treC 1986481..1988106 (+) 1626 WP_053866400.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=137429 APQ97_RS09965 WP_012774930.1 1983460..1984173(-) (treR) [Streptococcus suis strain NSUI060]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=137429 APQ97_RS09965 WP_012774930.1 1983460..1984173(-) (treR) [Streptococcus suis strain NSUI060]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAGCAGCTTCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCACTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCAATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MT72

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515