Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   APQ97_RS09950 Genome accession   NZ_CP012911
Coordinates   1979662..1981995 (-) Length   777 a.a.
NCBI ID   WP_002935942.1    Uniprot ID   -
Organism   Streptococcus suis strain NSUI060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1974662..1986995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS09910 (APQ97_09905) - 1974663..1975925 (-) 1263 WP_002935926.1 alpha/beta fold hydrolase -
  APQ97_RS09915 (APQ97_09910) - 1975932..1976312 (-) 381 WP_002935927.1 DUF1310 family protein -
  APQ97_RS09920 (APQ97_09915) - 1976414..1977664 (-) 1251 WP_002935930.1 Mbeg1-like protein -
  APQ97_RS09925 (APQ97_09920) - 1977657..1978046 (-) 390 WP_002935938.1 DUF1310 family protein -
  APQ97_RS09930 (APQ97_09925) - 1978141..1978398 (-) 258 WP_002935939.1 hypothetical protein -
  APQ97_RS09935 (APQ97_09930) - 1978445..1978822 (-) 378 WP_002935940.1 DUF1310 family protein -
  APQ97_RS09940 (APQ97_09935) - 1978848..1979111 (-) 264 WP_022540536.1 hypothetical protein -
  APQ97_RS09945 (APQ97_09940) - 1979104..1979496 (-) 393 WP_014636774.1 DUF1310 family protein -
  APQ97_RS09950 (APQ97_09945) mutS/mutS2 1979662..1981995 (-) 2334 WP_002935942.1 endonuclease MutS2 Machinery gene
  APQ97_RS09955 (APQ97_09950) - 1982546..1983094 (-) 549 WP_002935945.1 CvpA family protein -
  APQ97_RS09960 (APQ97_09955) - 1983091..1983402 (-) 312 WP_002935948.1 hypothetical protein -
  APQ97_RS09965 (APQ97_09960) treR 1983460..1984173 (-) 714 WP_012774930.1 trehalose operon repressor Regulator
  APQ97_RS09970 (APQ97_09965) treP 1984406..1986400 (+) 1995 WP_053866399.1 PTS system trehalose-specific EIIBC component -

Sequence

Protein


Download         Length: 777 a.a.        Molecular weight: 87573.28 Da        Isoelectric Point: 6.6127

>NTDB_id=137428 APQ97_RS09950 WP_002935942.1 1979662..1981995(-) (mutS/mutS2) [Streptococcus suis strain NSUI060]
MNNKIIETLEFHKVRQKIEPYLLTEQGFEELRQLEPMVEVQRIQQAFDELTDIAQIFVENPYFSLSATSDIGPAMRRLEL
DTDLNIAELLAVKKVLEVSKSLLDFYGNLENVSLSQLDKLFEKIELFPHLQGSLQSINDAGFVEDFASEKLARIRRKIRE
AEDQVRQVMQDILKTKGDMLSDSILASRNGRNVLPVKNTYRNKIAGVVHDISASGSTVYIEPRAVVTLNEEISHLRAEER
HELNRILQELSDMLRPHSGVIRNNAWLIGHIDFVRAKHLFAREHQAVVPKLSEKQDIALLNVRHPLIAKPVPNDLYFGSQ
LTAIVITGPNTGGKTIMLKTLGLTHLMAQSGLPILADKGSRVAIFKEIFADIGDEQSIEQSLSTFSSHMTHTVQILAEAD
QDSLILFDELGAGTDPQEGASLAMAILDDLRLRGIKTMATTHYPELKAYGIETSGIENASMEFDTNSLRPTYKFMQGVPG
RSNAFEIARRLGLSDIIIQSAQSWTDTDSDVNRIIEKLESQTVESRQRLDKIRDVEQENYKMNRALRKLYDELNRERENE
LNKARLEAKEIVDMALAESEDILKNLHAAASLKPHQIIEAKAELKKLAPEVVDLSKNKVLKKAKIQREAKVGDDIIVTAY
GQRGTLTNQLKDGRWEAQVGLIKMTLAKDEFELVKAEKAEQPKKRQVHTVKRANVRGPKARLDLRGKRYEEAMMELDEFI
DQALLNNLAQVDIVHGIGTGVIREGVTKYLRRNKQVKEFGYAPQNAGGSGCTIVTFK

Nucleotide


Download         Length: 2334 bp        

>NTDB_id=137428 APQ97_RS09950 WP_002935942.1 1979662..1981995(-) (mutS/mutS2) [Streptococcus suis strain NSUI060]
ATGAATAATAAAATTATTGAAACCCTTGAATTTCACAAGGTAAGACAAAAAATTGAGCCCTATCTCTTGACGGAACAGGG
CTTTGAAGAATTACGACAGTTGGAGCCCATGGTGGAAGTCCAACGTATCCAACAGGCCTTCGACGAGTTGACAGACATAG
CGCAGATTTTTGTGGAAAATCCCTATTTCAGTCTGTCAGCTACTAGTGACATTGGTCCAGCCATGCGTCGTTTGGAATTG
GATACAGACCTCAATATCGCTGAATTATTAGCTGTTAAAAAGGTCTTGGAAGTTTCTAAATCTCTCTTGGATTTTTATGG
AAATCTGGAAAATGTCAGTCTTAGCCAGCTGGATAAACTCTTTGAGAAGATTGAGCTTTTTCCACATTTACAGGGCTCCC
TCCAGTCCATCAATGATGCTGGTTTTGTAGAGGATTTTGCCTCAGAAAAGCTGGCTCGTATTAGAAGAAAAATCCGTGAA
GCTGAAGATCAAGTTCGTCAGGTCATGCAGGATATTTTGAAGACCAAGGGCGACATGCTGTCCGATAGTATTTTGGCAAG
CCGTAATGGACGCAATGTCCTTCCTGTTAAAAATACCTATCGCAATAAGATTGCGGGTGTAGTCCATGATATCTCCGCTT
CTGGCTCGACGGTTTATATTGAGCCGCGGGCAGTGGTGACCTTGAACGAAGAAATCAGTCACCTACGTGCAGAAGAACGC
CATGAGCTCAACCGTATCCTGCAGGAATTATCGGATATGCTCCGTCCGCATAGTGGTGTGATCCGTAACAATGCCTGGCT
TATCGGGCATATTGATTTCGTCCGTGCTAAGCATCTCTTTGCACGTGAACATCAAGCAGTTGTACCCAAACTATCTGAGA
AGCAGGATATTGCTCTTCTCAACGTTCGACATCCGCTCATTGCTAAGCCTGTACCAAATGACCTTTATTTCGGTAGTCAG
TTGACGGCTATCGTGATAACAGGTCCCAACACAGGTGGTAAGACCATCATGCTTAAGACCTTGGGATTGACCCATCTGAT
GGCCCAGTCTGGTTTGCCTATCTTGGCTGACAAGGGCAGTCGGGTAGCTATCTTCAAAGAAATTTTTGCGGACATTGGAG
ACGAACAGTCCATCGAGCAGAGTTTATCGACCTTCTCCAGTCACATGACCCACACGGTACAGATTTTGGCGGAGGCGGAT
CAAGATTCCCTCATTCTATTTGATGAGTTGGGAGCTGGGACAGATCCGCAGGAGGGTGCGTCCTTGGCAATGGCTATTTT
GGATGACCTTCGTCTGCGGGGGATCAAGACCATGGCGACCACCCACTACCCTGAGCTTAAGGCCTACGGGATAGAAACCT
CTGGTATTGAAAATGCCAGCATGGAGTTTGATACCAATAGCCTGCGTCCGACCTATAAGTTTATGCAGGGTGTTCCTGGT
CGCTCCAATGCCTTTGAAATTGCTCGCCGTCTTGGTCTATCTGATATTATTATCCAGTCAGCCCAATCTTGGACGGATAC
AGATAGCGATGTGAACCGCATTATCGAGAAATTGGAAAGTCAGACGGTTGAAAGTCGTCAGCGTCTGGATAAGATTCGTG
ATGTGGAGCAAGAAAATTACAAGATGAACCGAGCCCTCCGCAAGCTCTATGACGAGCTCAATCGTGAGAGGGAAAATGAG
CTCAACAAGGCACGCTTGGAAGCCAAGGAAATTGTAGATATGGCATTGGCAGAAAGCGAGGATATTCTCAAAAATCTCCA
TGCTGCAGCTAGTCTTAAGCCCCACCAGATTATCGAAGCCAAGGCAGAGCTGAAAAAGTTGGCGCCTGAAGTGGTGGATC
TGTCTAAAAACAAGGTTCTGAAGAAAGCTAAAATTCAGAGGGAAGCCAAGGTGGGCGATGACATTATCGTTACAGCTTAT
GGACAACGCGGGACCTTGACCAATCAGCTCAAGGACGGGCGTTGGGAAGCTCAGGTTGGCTTGATTAAGATGACCTTGGC
CAAAGATGAGTTTGAGTTAGTCAAGGCGGAGAAGGCAGAGCAGCCTAAGAAACGCCAGGTTCACACAGTCAAACGTGCCA
ATGTACGAGGACCAAAAGCCCGCTTAGATCTCCGTGGCAAACGCTACGAAGAGGCTATGATGGAGCTGGATGAATTTATC
GATCAGGCCCTTCTCAATAACCTAGCCCAAGTCGATATTGTCCACGGTATAGGTACAGGTGTCATCCGAGAAGGGGTGAC
CAAGTACCTACGCCGAAACAAGCAGGTCAAGGAGTTCGGCTATGCCCCACAAAATGCAGGTGGATCAGGCTGTACTATTG
TGACGTTTAAATAA

Domains

Predicted by InterProScan.

Smr domain (Smr)

(702-777)

MutS domain V (MutS_V)

(324-504)

MutS2 and Smr-associated SH3 domain (MSSS)

(631-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

39.646

100

0.404