Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   SD90_RS09645 Genome accession   NZ_CP010450
Coordinates   54103..54198 (+) Length   31 a.a.
NCBI ID   WP_198462994.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NGAS638     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49103..59198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD90_RS00315 (SD90_00315) purK 49172..50245 (+) 1074 WP_032463119.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  SD90_RS09420 - 50247..50987 (+) 741 WP_229764247.1 hypothetical protein -
  SD90_RS09425 - 50996..51664 (+) 669 WP_229764248.1 hypothetical protein -
  SD90_RS00325 (SD90_00325) purB 51684..52976 (+) 1293 WP_030127622.1 adenylosuccinate lyase -
  SD90_RS00330 (SD90_00330) comR 53108..54019 (+) 912 WP_002986681.1 transcriptional regulator Rgg4/ComR Regulator
  SD90_RS09645 comS 54103..54198 (+) 96 WP_198462994.1 quorum-sensing system DWW-type pheromone Regulator
  SD90_RS00335 (SD90_00335) ruvB 54245..55243 (+) 999 WP_011054100.1 Holliday junction branch migration DNA helicase RuvB -
  SD90_RS00340 (SD90_00340) - 55381..55818 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  SD90_RS00345 (SD90_00345) - 55841..56242 (+) 402 WP_011017240.1 MORN repeat-containing protein -
  SD90_RS00350 (SD90_00350) - 56239..58014 (+) 1776 WP_002986669.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 31 a.a.        Molecular weight: 3857.66 Da        Isoelectric Point: 10.0436

>NTDB_id=137415 SD90_RS09645 WP_198462994.1 54103..54198(+) (comS) [Streptococcus pyogenes strain NGAS638]
MLKKYKYYFIFAALLSFKVVQELSAVDWWRL

Nucleotide


Download         Length: 96 bp        

>NTDB_id=137415 SD90_RS09645 WP_198462994.1 54103..54198(+) (comS) [Streptococcus pyogenes strain NGAS638]
ATGTTAAAAAAGTATAAGTACTATTTTATATTCGCAGCTCTACTATCTTTTAAAGTAGTTCAAGAGCTTAGTGCTGTTGA
CTGGTGGCGATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS8232

100

100

1
  comS Streptococcus pyogenes MGAS315

45.161

100

0.452

Multiple sequence alignment