Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   APV63_RS02745 Genome accession   NZ_CP012905
Coordinates   558468..559988 (+) Length   506 a.a.
NCBI ID   WP_060473800.1    Uniprot ID   -
Organism   Helicobacter pylori strain 7C     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 553468..564988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APV63_RS02715 (APV63_02715) moaC 553615..554091 (+) 477 WP_001131543.1 cyclic pyranopterin monophosphate synthase MoaC -
  APV63_RS02720 (APV63_02720) hpaA 554210..554992 (+) 783 WP_060473097.1 flagellar sheath lipoprotein HpaA -
  APV63_RS02725 (APV63_02725) - 555021..555857 (+) 837 WP_060473098.1 outer membrane protein -
  APV63_RS02730 (APV63_02730) tig 555969..557324 (+) 1356 WP_060473099.1 trigger factor -
  APV63_RS02735 (APV63_02735) clpP 557345..557932 (+) 588 WP_000540573.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  APV63_RS08450 (APV63_02740) def 557937..558425 (+) 489 Protein_537 peptide deformylase -
  APV63_RS02745 (APV63_02745) comM 558468..559988 (+) 1521 WP_060473800.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  APV63_RS02750 (APV63_02750) - 560013..562073 (+) 2061 WP_060473100.1 heavy metal translocating P-type ATPase -
  APV63_RS02755 (APV63_02755) - 562123..562743 (+) 621 WP_060473101.1 restriction endonuclease subunit S -
  APV63_RS02760 (APV63_02760) hofF 562968..564467 (-) 1500 WP_060473102.1 outer membrane beta-barrel protein HofF -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 57141.08 Da        Isoelectric Point: 8.2329

>NTDB_id=137337 APV63_RS02745 WP_060473800.1 558468..559988(+) (comM) [Helicobacter pylori strain 7C]
MINTIFCATMQKGVAEIVAVEATFTRALPAFVISGLANNSIQEAKQRVQSALQNNDFTFPPLKITINLSPSDLPKSGSHF
DLPIALLIALQKQELAFKEWFAFGELGLDGKIKPNSNIFPMLLDIAIKHPHAKVIAPKANEELFSLIPNLQCFFVDHFKE
ALEILQNPEIKADTHTKKLPFKTIELNDKEYYFSDAYALDFKEVKGQAVAKEAALIASAGFHNLILEGSPGCGKSMIINR
MRYILPPLSLNEILEATKLRILSEQDSAYYPLRSFRNPHQSASKSSILGSSSLREPKPGEIALAHNGMLFFDELPHFKKD
ILEALREPLENNKLVISRVHSKIEYDTSFLFVGAQNPCLCGNLLSATKACRCQDREITQYKNRLSEPFLDRIDLFVQMEE
GNYKDTPSHSWTSKEMHELVLLAFKQQKLRKQSAFNGKLNEEQIERFCPLNTEAQKLLEQAVERFNLSMRSVNKVKKVAR
TIADLNACENIEKSHMLKALSFRKIS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=137337 APV63_RS02745 WP_060473800.1 558468..559988(+) (comM) [Helicobacter pylori strain 7C]
ATGATCAACACGATATTTTGCGCGACCATGCAAAAGGGGGTGGCAGAAATCGTGGCTGTGGAAGCGACTTTCACAAGGGC
TTTGCCGGCGTTTGTGATTTCGGGCCTGGCTAATAACTCTATCCAAGAAGCCAAGCAACGGGTCCAATCGGCTTTACAAA
ATAACGATTTCACTTTCCCGCCTTTAAAAATCACCATCAACCTTTCCCCCTCAGATTTGCCTAAATCCGGGAGCCATTTT
GATTTGCCTATCGCTCTTTTAATCGCTTTGCAAAAACAAGAGTTGGCTTTTAAAGAGTGGTTTGCTTTTGGGGAGTTAGG
GCTTGATGGCAAGATCAAACCCAATTCTAACATTTTCCCCATGCTTTTAGACATTGCCATTAAGCACCCCCATGCTAAAG
TCATTGCGCCTAAGGCTAACGAAGAGCTTTTTTCGCTTATTCCTAATTTGCAATGCTTTTTTGTGGATCATTTTAAAGAA
GCGTTAGAAATCTTGCAAAACCCTGAAATCAAAGCAGACACCCACACGAAAAAACTACCCTTTAAAACGATAGAATTGAA
CGATAAAGAGTATTATTTTTCAGACGCCTATGCCTTAGATTTTAAAGAAGTTAAGGGGCAAGCTGTCGCTAAAGAAGCCG
CTTTGATCGCTAGCGCGGGGTTTCATAACTTGATTTTAGAGGGAAGTCCAGGGTGTGGGAAAAGCATGATCATTAATCGC
ATGCGTTATATTTTACCCCCCTTAAGCTTGAATGAAATCCTAGAAGCGACAAAATTACGCATTTTAAGCGAACAAGACAG
CGCTTATTACCCTTTAAGGAGTTTTAGAAACCCTCACCAGAGCGCTTCAAAATCCAGCATTTTAGGCTCAAGCTCTCTAA
GAGAGCCAAAACCTGGCGAAATCGCGCTAGCGCATAACGGTATGCTTTTTTTTGATGAATTGCCTCATTTTAAAAAGGAT
ATTTTGGAAGCTTTAAGAGAGCCTTTAGAAAACAATAAATTAGTGATCTCACGAGTGCATAGTAAGATTGAATACGACAC
CTCTTTTTTATTTGTGGGGGCTCAAAACCCTTGCTTGTGCGGGAATTTACTCAGCGCAACCAAAGCATGCCGTTGCCAAG
ATAGAGAGATCACGCAGTATAAAAACCGCTTGAGCGAGCCTTTTTTGGATAGGATTGATTTGTTTGTGCAAATGGAAGAG
GGGAATTATAAAGACACGCCGTCGCATTCTTGGACTTCAAAAGAGATGCATGAATTGGTGTTATTAGCTTTCAAACAGCA
AAAGTTAAGGAAACAGAGCGCTTTTAATGGTAAGCTTAACGAAGAGCAGATAGAACGATTTTGCCCTTTAAATACTGAAG
CACAAAAGTTGTTAGAACAGGCGGTTGAAAGGTTTAATCTGTCCATGCGCTCTGTCAATAAGGTCAAAAAAGTCGCTAGG
ACGATTGCGGATTTAAACGCTTGCGAGAATATAGAAAAATCTCACATGCTTAAAGCGCTGAGTTTTAGAAAGATTTCTTA
A

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-503)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(200-403)

Subunit ChlI of Mg-chelatase (ChlI)

(20-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

97.233

100

0.972
  comM Acinetobacter baylyi ADP1

36.204

100

0.366
  comM Legionella pneumophila str. Paris

36.382

99.407

0.362
  comM Legionella pneumophila strain ERS1305867

36.382

99.407

0.362

Multiple sequence alignment