Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | APV63_RS01945 | Genome accession | NZ_CP012905 |
| Coordinates | 393906..394916 (-) | Length | 336 a.a. |
| NCBI ID | WP_060472993.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain 7C | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 388906..399916
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| APV63_RS01900 (APV63_01900) | - | 388954..389328 (-) | 375 | WP_000772151.1 | chemotaxis response regulator CheY | - |
| APV63_RS01905 (APV63_01905) | - | 389618..390220 (+) | 603 | WP_000291649.1 | outer membrane protein | - |
| APV63_RS01915 (APV63_01915) | - | 390352..390759 (-) | 408 | WP_060472989.1 | hypothetical protein | - |
| APV63_RS01920 (APV63_01920) | - | 390762..391004 (-) | 243 | WP_060472990.1 | PP0621 family protein | - |
| APV63_RS01925 (APV63_01925) | rsmG | 390998..391534 (-) | 537 | WP_042634093.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| APV63_RS01930 (APV63_01930) | queA | 391531..392568 (-) | 1038 | WP_060472991.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| APV63_RS01935 (APV63_01935) | tatC | 392569..393303 (-) | 735 | WP_053574450.1 | twin-arginine translocase subunit TatC | - |
| APV63_RS01940 (APV63_01940) | tatB | 393296..393778 (-) | 483 | WP_060472992.1 | Sec-independent protein translocase protein TatB | - |
| APV63_RS01945 (APV63_01945) | ruvB | 393906..394916 (-) | 1011 | WP_060472993.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| APV63_RS01950 (APV63_01950) | panB | 394916..395728 (-) | 813 | WP_060472994.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| APV63_RS01955 (APV63_01955) | - | 395877..396599 (+) | 723 | WP_000523334.1 | hypothetical protein | - |
| APV63_RS01960 (APV63_01960) | - | 396589..397446 (+) | 858 | WP_060472995.1 | outer membrane beta-barrel protein | - |
| APV63_RS01965 (APV63_01965) | - | 397458..398399 (+) | 942 | WP_060472996.1 | outer membrane beta-barrel protein | - |
| APV63_RS01970 (APV63_01970) | - | 398409..399731 (+) | 1323 | WP_060472997.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37346.35 Da Isoelectric Point: 6.3684
>NTDB_id=137331 APV63_RS01945 WP_060472993.1 393906..394916(-) (ruvB) [Helicobacter pylori strain 7C]
MKERIVNLETLDFETSQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAARLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAAFMREDEGTIEDVIEPFLLANGYLERTAKGRIATTK
THALLKIPTLRSQSLF
MKERIVNLETLDFETSQEVSLRPSLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAARLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGKPVGLNTIAAFMREDEGTIEDVIEPFLLANGYLERTAKGRIATTK
THALLKIPTLRSQSLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=137331 APV63_RS01945 WP_060472993.1 393906..394916(-) (ruvB) [Helicobacter pylori strain 7C]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACTGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTTATTGGCGCTACCACT
AGAGCTGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATTAAAAAAGCCGCTGCTAGACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTGAAAAGGGTGCGCGATTTTGCGCTAGTCAAAAATTCAAGCTTGATG
GATTTGAACATCACTTTGCATGCCTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAATACGATTGCAGCGTTTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGGTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGACTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAGATCTCAAAGTTTGTTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAGTCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGTGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACTGCCGCTCCCATGATAGAAAAAAGCGGTGATTTAGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGACTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTTATTGGCGCTACCACT
AGAGCTGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
AGCCCTTATCATTAAAAAAGCCGCTGCTAGACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTGAAAAGGGTGCGCGATTTTGCGCTAGTCAAAAATTCAAGCTTGATG
GATTTGAACATCACTTTGCATGCCTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGAAAGCCGGTGGGTTTGAATACGATTGCAGCGTTTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGGTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGACTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAGATCTCAAAGTTTGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
96.726 |
100 |
0.967 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.251 |
96.131 |
0.512 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
52.117 |
91.369 |
0.476 |