Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AOY09_RS01345 Genome accession   NZ_CP012901
Coordinates   278424..279098 (+) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain N15-01092     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 273424..284098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY09_RS01330 (AOY09_00258) - 273970..276576 (-) 2607 WP_034038028.1 phosphomannomutase/phosphoglucomutase -
  AOY09_RS01335 (AOY09_00259) dut 276613..277068 (-) 456 WP_019372296.1 dUTP diphosphatase -
  AOY09_RS01340 (AOY09_00260) coaBC 277076..278284 (-) 1209 WP_003114358.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AOY09_RS01345 (AOY09_00261) radC 278424..279098 (+) 675 WP_003096559.1 RadC family protein Machinery gene
  AOY09_RS01350 (AOY09_00262) - 279115..279663 (-) 549 WP_003098290.1 hypothetical protein -
  AOY09_RS01355 (AOY09_00263) - 279689..281269 (-) 1581 WP_003098288.1 ABC transporter substrate-binding protein -
  AOY09_RS01360 (AOY09_00264) rpmB 281624..281860 (+) 237 WP_003096556.1 50S ribosomal protein L28 -
  AOY09_RS01365 (AOY09_00265) rpmG 281872..282027 (+) 156 WP_003096555.1 50S ribosomal protein L33 -
  AOY09_RS01370 (AOY09_00266) - 282161..282523 (-) 363 WP_003096551.1 cupin domain-containing protein -
  AOY09_RS01375 (AOY09_00267) - 282590..283924 (-) 1335 WP_017001885.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=137216 AOY09_RS01345 WP_003096559.1 278424..279098(+) (radC) [Pseudomonas aeruginosa strain N15-01092]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=137216 AOY09_RS01345 WP_003096559.1 278424..279098(+) (radC) [Pseudomonas aeruginosa strain N15-01092]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397