Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | SE88_RS07595 | Genome accession | NZ_CP010436 |
| Coordinates | 1546267..1546842 (-) | Length | 191 a.a. |
| NCBI ID | WP_001203580.1 | Uniprot ID | A0AAC8SBK6 |
| Organism | Helicobacter pylori strain 26695-1MET | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1541267..1551842
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SE88_RS07585 (SE88_07585) | - | 1542938..1544149 (-) | 1212 | WP_000502610.1 | restriction endonuclease subunit S | - |
| SE88_RS07590 (SE88_07590) | - | 1544197..1546236 (-) | 2040 | WP_001045361.1 | VRR-NUC domain-containing protein | - |
| SE88_RS07595 (SE88_07595) | comFC | 1546267..1546842 (-) | 576 | WP_001203580.1 | ComF family protein | Machinery gene |
| SE88_RS07600 (SE88_07600) | tmk | 1546830..1547405 (-) | 576 | WP_000289698.1 | dTMP kinase | - |
| SE88_RS07605 (SE88_07605) | coaD | 1547407..1547880 (-) | 474 | WP_001169234.1 | pantetheine-phosphate adenylyltransferase | - |
| SE88_RS07610 (SE88_07610) | - | 1547880..1548443 (-) | 564 | WP_000780126.1 | UbiX family flavin prenyltransferase | - |
| SE88_RS07615 (SE88_07615) | flgA | 1548453..1549109 (-) | 657 | WP_000697639.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| SE88_RS07620 (SE88_07620) | uvrD | 1549106..1551154 (-) | 2049 | WP_000968580.1 | DNA helicase UvrD | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21331.91 Da Isoelectric Point: 8.8889
>NTDB_id=137121 SE88_RS07595 WP_001203580.1 1546267..1546842(-) (comFC) [Helicobacter pylori strain 26695-1MET]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKVHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=137121 SE88_RS07595 WP_001203580.1 1546267..1546842(-) (comFC) [Helicobacter pylori strain 26695-1MET]
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATAAAAGTACACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCAGAGTTTGTGAAAATCCTGCAAGAACAAGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGGAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTTTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATAAAAGTACACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
100 |
100 |
1 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.979 |
100 |
0.372 |