Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AOT11_RS05995 Genome accession   NZ_CP012881
Coordinates   1297841..1298515 (-) Length   224 a.a.
NCBI ID   WP_017420465.1    Uniprot ID   -
Organism   Vibrio vulnificus NBRC 15645 = ATCC 27562     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1292841..1303515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT11_RS05965 (AOT11_13035) coaD 1292878..1293372 (+) 495 WP_017420461.1 pantetheine-phosphate adenylyltransferase -
  AOT11_RS05970 (AOT11_13040) - 1293449..1295425 (-) 1977 WP_017420462.1 LTA synthase family protein -
  AOT11_RS05975 (AOT11_13045) mutM 1295573..1296382 (-) 810 WP_026050278.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  AOT11_RS05980 (AOT11_13050) - 1296412..1296909 (-) 498 WP_017420464.1 hypothetical protein -
  AOT11_RS05985 (AOT11_13055) rpmG 1297107..1297277 (-) 171 WP_011078893.1 50S ribosomal protein L33 -
  AOT11_RS05990 (AOT11_13060) rpmB 1297293..1297529 (-) 237 WP_011078894.1 50S ribosomal protein L28 -
  AOT11_RS05995 (AOT11_13065) radC 1297841..1298515 (-) 675 WP_017420465.1 RadC family protein Machinery gene
  AOT11_RS06000 (AOT11_13070) - 1298629..1300296 (-) 1668 WP_038969595.1 methyl-accepting chemotaxis protein -
  AOT11_RS06005 (AOT11_13075) coaBC 1300580..1301785 (+) 1206 WP_026050276.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AOT11_RS06010 (AOT11_13080) slmA 1301936..1302526 (+) 591 WP_011078898.1 nucleoid occlusion factor SlmA -
  AOT11_RS06015 (AOT11_13085) - 1302530..1303468 (+) 939 WP_017420468.1 Kdo(2)-lipid IV(A) acyltransferase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25367.04 Da        Isoelectric Point: 7.0643

>NTDB_id=137119 AOT11_RS05995 WP_017420465.1 1297841..1298515(-) (radC) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
MSLKNLPSESMPREKLLQRGPESLSDAELLAIFLRTGTQGMNVIELADFLLRDFGSLRKLFSADEQSFCRHKGLGQAKYV
QLQAVLEMTQRYLAETLQRGDALTSPQHTKLYLSSMLRDRHREAFYVLFLDNQNRVIKDEVMFEGTIDAASVYPREVVKR
ALYYNAAALILAHNHPSGVAEPSQADRRITRRLSDALGLVDIRVLDHFVVGDGEVVSFAERGWI

Nucleotide


Download         Length: 675 bp        

>NTDB_id=137119 AOT11_RS05995 WP_017420465.1 1297841..1298515(-) (radC) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
ATGAGCCTAAAAAACCTGCCTAGTGAATCCATGCCAAGGGAAAAGTTGCTTCAGCGTGGGCCTGAGTCTTTGTCCGATGC
CGAGTTACTCGCCATCTTTTTAAGAACAGGCACACAAGGAATGAACGTGATTGAACTTGCCGATTTTTTATTGCGAGACT
TTGGTTCGCTGAGAAAACTGTTTTCTGCCGATGAACAGAGCTTTTGCCGTCACAAAGGATTGGGGCAGGCAAAATACGTT
CAATTACAAGCTGTTTTGGAAATGACGCAACGTTATTTGGCCGAAACATTGCAACGTGGTGATGCGCTTACCAGTCCACA
GCATACTAAGCTTTATCTCTCTTCCATGCTGCGCGATCGCCATCGAGAAGCGTTTTATGTATTGTTCCTCGATAATCAAA
ATCGTGTCATTAAAGATGAGGTGATGTTTGAAGGCACCATCGATGCCGCCTCGGTCTATCCTCGGGAAGTTGTCAAAAGA
GCCTTATACTATAATGCCGCCGCTTTAATACTGGCGCACAACCATCCTTCAGGCGTAGCAGAGCCAAGCCAAGCAGATCG
GCGAATTACTCGACGTTTGAGTGACGCATTGGGCTTAGTGGATATACGGGTATTGGACCACTTTGTTGTCGGCGATGGAG
AGGTAGTGTCATTCGCGGAAAGAGGCTGGATTTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.704

96.429

0.518
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

37.946

100

0.379

Multiple sequence alignment