Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   SB24_RS11430 Genome accession   NZ_CP010406
Coordinates   2398230..2398349 (-) Length   39 a.a.
NCBI ID   WP_015240778.1    Uniprot ID   -
Organism   Bacillus sp. Pc3     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 2393230..2403349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS11385 (SB24_11385) speE 2393632..2394462 (+) 831 WP_003151052.1 spermidine synthase -
  SB24_RS11390 (SB24_11390) speB 2394521..2395393 (+) 873 WP_007407646.1 agmatinase -
  SB24_RS11395 (SB24_11395) - 2395561..2395779 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  SB24_RS11405 (SB24_11405) - 2396370..2396882 (-) 513 WP_039253458.1 stage II sporulation protein M -
  SB24_RS11410 (SB24_11410) - 2396926..2397207 (-) 282 WP_007407643.1 hypothetical protein -
  SB24_RS11415 (SB24_11415) - 2397393..2397578 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  SB24_RS11420 (SB24_11420) - 2397613..2397816 (-) 204 WP_007407641.1 hypothetical protein -
  SB24_RS11425 (SB24_11425) - 2397830..2398033 (-) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  SB24_RS11430 (SB24_11430) phrF 2398230..2398349 (-) 120 WP_015240778.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  SB24_RS11435 (SB24_11435) rapF 2398333..2399478 (-) 1146 WP_033574379.1 tetratricopeptide repeat protein Regulator
  SB24_RS11440 (SB24_11440) - 2399709..2401064 (+) 1356 WP_039253463.1 YncE family protein -
  SB24_RS11445 (SB24_11445) - 2401104..2402480 (+) 1377 WP_039063793.1 YncE family protein -
  SB24_RS11450 (SB24_11450) - 2402487..2402999 (-) 513 Protein_2251 bacteriocin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4281.16 Da        Isoelectric Point: 10.0233

>NTDB_id=136890 SB24_RS11430 WP_015240778.1 2398230..2398349(-) (phrF) [Bacillus sp. Pc3]
MKLKYKLALTCLAISTVFVSADIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=136890 SB24_RS11430 WP_015240778.1 2398230..2398349(-) (phrF) [Bacillus sp. Pc3]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
AAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462

Multiple sequence alignment