Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   SB24_RS08005 Genome accession   NZ_CP010406
Coordinates   1727335..1727733 (+) Length   132 a.a.
NCBI ID   WP_039252825.1    Uniprot ID   -
Organism   Bacillus sp. Pc3     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1722335..1732733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB24_RS07985 (SB24_07985) - 1724736..1725098 (-) 363 WP_014304320.1 helix-turn-helix domain-containing protein -
  SB24_RS07990 (SB24_07990) hxlA 1725330..1725965 (+) 636 WP_015416785.1 3-hexulose-6-phosphate synthase -
  SB24_RS07995 (SB24_07995) hxlB 1725962..1726519 (+) 558 WP_039252823.1 6-phospho-3-hexuloisomerase -
  SB24_RS08000 (SB24_08000) nucA/comI 1726877..1727314 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  SB24_RS08005 (SB24_08005) nin/comJ 1727335..1727733 (+) 399 WP_039252825.1 competence protein ComJ Regulator
  SB24_RS08010 (SB24_08010) - 1727774..1729210 (-) 1437 WP_015416781.1 family 1 glycosylhydrolase -
  SB24_RS08015 (SB24_08015) - 1729314..1729637 (-) 324 WP_007409357.1 YckD family protein -
  SB24_RS08020 (SB24_08020) - 1729709..1730143 (-) 435 WP_012116767.1 RDD family protein -
  SB24_RS08025 (SB24_08025) - 1730158..1731294 (-) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  SB24_RS08030 (SB24_08030) - 1731359..1732561 (-) 1203 WP_039252831.1 GTP-binding protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14993.97 Da        Isoelectric Point: 4.9712

>NTDB_id=136880 SB24_RS08005 WP_039252825.1 1727335..1727733(+) (nin/comJ) [Bacillus sp. Pc3]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAASM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=136880 SB24_RS08005 WP_039252825.1 1727335..1727733(+) (nin/comJ) [Bacillus sp. Pc3]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCTCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment